PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HD-ZIP

Protein Properties

Length: 291aa MW: 32963.7 Da PI: 6.6059

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H00906.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	75	128	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k Migut.H00906.1.p 75 KKRRLNMEQVKALEKSFELGNKLEPERKVQLARALGLQPRQVAIWFQNRRARWK 128 456899***********************************************9 PP
2	HD-ZIP_I/II	133.9	5.6e-43	74	165	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE+sFe +kLeperKv+lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++dalk++n++L++++++L+++l Migut.H00906.1.p 74 EKKRRLNMEQVKALEKSFELGNKLEPERKVQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDALKSDNDSLKSHNKKLQTQLV 165 69**************************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-19	69	132	IPR009057	Homeodomain-like
SMART	SM00389	4.8E-19	73	134	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.73	74	130	IPR001356	Homeobox domain
CDD	cd00086	5.59E-17	75	131	No hit	No description
Pfam	PF00046	6.7E-16	75	128	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-19	77	137	IPR009057	Homeodomain-like
PRINTS	PR00031	9.1E-6	101	110	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	105	128	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.1E-6	110	126	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.1E-16	130	169	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MAFIPESMFR NHDDHTHFPT SSPNCAPQDF QGVTEYLMRR SMSLTGGGGM DRGEEYQQDD 60 DVSDDGSQMM MLGEKKRRLN MEQVKALEKS FELGNKLEPE RKVQLARALG LQPRQVAIWF 120 QNRRARWKTK QLEKDYDVLK RQFDALKSDN DSLKSHNKKL QTQLVCLKAA RESTVGIINL 180 NKDNEGSNWS NGSENSSEVN LNKTSSTTDT TLFFPNHHQN NNNNKNGAVY PPAISPNFTQ 240 LLHMSSSRPA AAADHIQPPP VSNECFGTMF GGIEETQEFW PWPAEQQNFH *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	130	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H00906.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012841374.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX21-like
Swissprot	Q8S7W9	4e-73	HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBL	A0A022R3B2	0.0	A0A022R3B2_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	2e-60	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Migut.H00906.1.p
Entrez Gene	105961676