PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H00704.1.p | ||||||||
Common Name | MIMGU_mgv1a021390mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 26465.9 Da PI: 10.4173 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.3 | 1e-14 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + rW+ Ed ll +v ++G+g W+ a+++ gRt+k+c++rw + Migut.H00704.1.p 18 KSRWSLKEDRLLTSLVDRHGPGKWDFLAQHIK-GRTGKSCRLRWINQ 63 689****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 39.9 | 9.8e-13 | 71 | 113 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ eE+ +l+++++++G++ W+ I +++ gRt++++k+ +++ Migut.H00704.1.p 71 APFSDEEQRRLLQLHERYGNK-WSMIVCHFP-GRTDNHVKNTYHS 113 689******************.*********.********98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.969 | 13 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-12 | 17 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-14 | 18 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.1E-28 | 18 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 20 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-12 | 20 | 62 | No hit | No description |
SMART | SM00717 | 5.2E-7 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.82 | 70 | 119 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.4E-10 | 71 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-18 | 72 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.52E-7 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEAQKNNEAI RQRMVPYKSR WSLKEDRLLT SLVDRHGPGK WDFLAQHIKG RTGKSCRLRW 60 INQLNPRLDR APFSDEEQRR LLQLHERYGN KWSMIVCHFP GRTDNHVKNT YHSLVGSRYV 120 KGSGGQSSSG IVLKPKPRRG ALPAARYFTR PTVPVGSQSS NVSCQGNNYS GFADPASPAM 180 SNSVSVANVC PNNQGICCGD SVTSDAKSAA LYRAPQPQQG VGIRTYQFID FLGIGNSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-26 | 21 | 115 | 7 | 101 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-26 | 21 | 115 | 7 | 101 | C-Myb DNA-Binding Domain |
1msf_C | 2e-26 | 21 | 115 | 7 | 101 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H00704.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853736.1 | 1e-179 | PREDICTED: myb-related protein Myb4 | ||||
Refseq | XP_012853737.1 | 1e-179 | PREDICTED: myb-related protein Myb4 | ||||
TrEMBL | A0A022QB53 | 1e-170 | A0A022QB53_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16789 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 7e-35 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H00704.1.p |