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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Migut.H00617.1.p |
| Common Name | LOC105971404, MIMGU_mgv1a011591mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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| Family |
TCP |
| Protein Properties |
Length: 278aa MW: 31066 Da PI: 6.7234 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Migut.H00617.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 99.8 | 5e-31 | 50 | 164 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaessss 80
g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl ak +i+el+ + + ++s++s
Migut.H00617.1.p 50 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDIAKNEIDELPPLqipqgmminwnssnV------VPEHSRRS 136
689*************************************************************555555543222220......22222222 PP
TCP 81 sasnsssg.........................k 89
+ + +
Migut.H00617.1.p 137 E------DinlfggnnnklkevdtsnnrdeaetN 164
2......022333332222222222221222220 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0031347 | Biological Process | regulation of defense response |
| GO:0045962 | Biological Process | positive regulation of development, heterochronic |
| GO:0009507 | Cellular Component | chloroplast |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MSSTSNNTDN NPAAKNLFKA ATTSTTTTAA SSWSNTRLKD PRIVRVSRAF GGKDRHSKVC 60
TVRGLRDRRV RLSVPTAIQL YDLQDRLGLN QPSKVVDWLL DIAKNEIDEL PPLQIPQGMM 120
INWNSSNVVP EHSRRSEDIN LFGGNNNKLK EVDTSNNRDE AETNWTRSSD EGALYNNVSA 180
YNSYVRWDNY PSNMLTLSHD QQHNNHNPTK GHALITSAHN QLNDDWHNFS LQLPSYFATT 240
GAEFDAEKAN YDQRSQLESS SVLCTANLLP SQNNDGS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Yamburenko MV,Zubo YO,Börner T
Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
Plant J., 2015. 82(6): p. 1030-41
[PMID:25976841] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development.
Plant Physiol., 2017. 175(2): p. 874-885
[PMID:28842549]
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