PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00343.2.p
Common NameLOC105973539, MIMGU_mgv1a010880mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 299aa    MW: 32174.2 Da    PI: 5.7918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00343.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.9e-11556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT eE+  l+ +++++G g W+tI +          R+  ++k++w+++
  Migut.H00343.2.p  5 KQKWTSEEEAALKAGIHKYGLGKWSTILKDPEfssvlHSRSNVDLKDKWRNL 56
                      79***********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.453163IPR017930Myb domain
SuperFamilySSF466898.97E-16258IPR009057Homeodomain-like
SMARTSM007176.2E-7459IPR001005SANT/Myb domain
PfamPF002494.3E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-14556IPR009057Homeodomain-like
CDDcd116602.51E-20657No hitNo description
PROSITE profilePS5150423.8119190IPR005818Linker histone H1/H5, domain H15
SMARTSM005261.5E-14120185IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.39E-16122195IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-17125192IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.8E-13127183IPR005818Linker histone H1/H5, domain H15
CDDcd000737.37E-11130184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGI HKYGLGKWST ILKDPEFSSV LHSRSNVDLK DKWRNLNCMA  60
NGMGSRHRAR VPSKSLQLTT TPKQDEETAA GDAIVEKDSE VVDVTTLATS SETSQDAGSG  120
KEISRLDDFI MEAIAKLKEP RGSSRAAISQ YIEDHYPATQ DFERNLATNL KSLTENGRLV  180
KVKHQYRIAP KSISFAARKE PTQLLLENGD KKESSDGAGK SVVLLTKAKI DAELEKMKGM  240
SAQEAAAAAA KAVAEAEAAI AEAEAAAREA EEAEAEAEAA QCFADAAQKA LNCQIIRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00343.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854030.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_012854037.10.0PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_012854044.10.0PREDICTED: telomere repeat-binding factor 1-like
TrEMBLA0A022RXT70.0A0A022RXT7_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-66telomere repeat binding factor 1