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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H00343.1.p | ||||||||
Common Name | LOC105973539, MIMGU_mgv1a010880mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 299aa MW: 32174.2 Da PI: 5.7918 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.8 | 1.9e-11 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +++++G g W+tI + R+ ++k++w+++ Migut.H00343.1.p 5 KQKWTSEEEAALKAGIHKYGLGKWSTILKDPEfssvlHSRSNVDLKDKWRNL 56 79***********************************9************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.453 | 1 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.51E-20 | 6 | 57 | No hit | No description |
PROSITE profile | PS51504 | 23.8 | 119 | 190 | IPR005818 | Linker histone H1/H5, domain H15 |
SMART | SM00526 | 1.5E-14 | 120 | 185 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 2.39E-16 | 122 | 195 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.2E-17 | 125 | 192 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 5.8E-13 | 127 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
CDD | cd00073 | 7.37E-11 | 130 | 184 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGAPKQKWTS EEEAALKAGI HKYGLGKWST ILKDPEFSSV LHSRSNVDLK DKWRNLNCMA 60 NGMGSRHRAR VPSKSLQLTT TPKQDEETAA GDAIVEKDSE VVDVTTLATS SETSQDAGSG 120 KEISRLDDFI MEAIAKLKEP RGSSRAAISQ YIEDHYPATQ DFERNLATNL KSLTENGRLV 180 KVKHQYRIAP KSISFAARKE PTQLLLENGD KKESSDGAGK SVVLLTKAKI DAELEKMKGM 240 SAQEAAAAAA KAVAEAEAAI AEAEAAAREA EEAEAEAEAA QCFADAAQKA LNCQIIRV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H00343.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012854030.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_012854037.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_012854044.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like | ||||
TrEMBL | A0A022RXT7 | 0.0 | A0A022RXT7_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5122 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 1e-66 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H00343.1.p |
Entrez Gene | 105973539 |