PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HD-ZIP

Protein Properties

Length: 279aa MW: 30738.4 Da PI: 8.5732

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H00315.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	130	184	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Le+ F+++++++ +++++LA+ l+L rqV vWFqNrRa+ k Migut.H00315.1.p 130 RKKLRLTKAQSALLEQSFKQHSTLNPKQKQDLARDLKLRPRQVEVWFQNRRARTK 184 678899***********************************************98 PP
2	HD-ZIP_I/II	122.4	2.1e-39	130	220	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+k q++lLE+sF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eL+ +lk Migut.H00315.1.p 130 RKKLRLTKAQSALLEQSFKQHSTLNPKQKQDLARDLKLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLQKELQELK-ALK 220 69*************************************************************************************9.665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.584	126	186	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.25E-17	127	187	IPR009057	Homeodomain-like
SMART	SM00389	9.2E-15	128	190	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-15	130	184	IPR001356	Homeobox domain
CDD	cd00086	3.06E-15	130	187	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.2E-17	130	184	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	161	184	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.0E-10	186	220	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	4.0E-24	186	229	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MGMEDLCSTG LFLGLGFSSQ SNGNKKPINN NNNNNIGSDH HEPSLKLSLS GETFDQNHAV 60 KKVVKSDGEK GGGFNDLYRQ DSGGSSFSGH VSSSVKRERE NCSGGEEGGE LDRVNSSRVS 120 DEDDDVINGR KKLRLTKAQS ALLEQSFKQH STLNPKQKQD LARDLKLRPR QVEVWFQNRR 180 ARTKLKQTEV DCEFLKKCCE TLTEENRRLQ KELQELKALK SAQPLYMQLP AATLTMCPSC 240 ERIGAAAAPT ENSAKSSFVL APKPPHFYNP FTNSSAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	186	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H00315.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854241.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	2e-94	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A022RX48	0.0	A0A022RX48_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-83	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Migut.H00315.1.p
Entrez Gene	105973744

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]