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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Migut.H00286.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family |
MIKC_MADS |
Protein Properties |
Length: 241aa MW: 27710.8 Da PI: 9.6758 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Migut.H00286.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 89.4 | 1.9e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
+ri+n++ rqvtfskRr g+lKKA+ELS+LCdaev +iifs+tgklye+s
Migut.H00286.1.p 9 ERIDNTTSRQVTFSKRRSGLLKKAKELSILCDAEVGLIIFSTTGKLYEFS 58
69***********************************************8 PP
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2 | K-box | 81.9 | 1.5e-27 | 85 | 173 | 11 | 99 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
++ +++e+a+L++++ Lq+++R+l+Ge+L +s+ +Lq+Le+qLe+sl +R kK+++l+e+i+el++k + +++en +L kk++
Migut.H00286.1.p 85 GSEIMFWKREAANLRQQLLDLQENHRKLMGEELCGMSVDDLQRLENQLETSLGGVRMKKEQILTEKIQELKRKGNLMHQENVELYKKVK 173
567789*******************************************************************************9986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 2.7E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.314 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.23E-40 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 5.76E-32 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.72 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.7E-25 | 88 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008134 | Molecular Function | transcription factor binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MGRGKIVIER IDNTTSRQVT FSKRRSGLLK KAKELSILCD AEVGLIIFST TGKLYEFSGD 60 NRSMKSIIDR YTKAKEEHHK LLNPGSEIMF WKREAANLRQ QLLDLQENHR KLMGEELCGM 120 SVDDLQRLEN QLETSLGGVR MKKEQILTEK IQELKRKGNL MHQENVELYK KVKFMEEENT 180 ELYRKAYGAR EIFVPNNGSG FLSFGLTIND GPIQLQLSQP AQPDNIETPT RTTESRYKIR 240 *
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |