PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H00280.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 21033.8 Da PI: 4.1312 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.7e-07 | 1 | 23 | 24 | 47 |
HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47 W++Ia +++ gRt++++k++w ++ Migut.H00280.1.p 1 WTLIAGRVP-GRTANDIKNFWKTH 23 9********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 4.18E-5 | 1 | 24 | No hit | No description |
SuperFamily | SSF46689 | 6.52E-5 | 1 | 27 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.945 | 1 | 28 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-8 | 1 | 23 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
WTLIAGRVPG RTANDIKNFW KTHFEKQSAT AAAAIAGGES SAGIKTTTQS CNIFKPIPRT 60 LSKLFQQVPE YCPVNVDDNN NNNNNNNNNN NNNNNNNNNN NLKNKEPFLP VIQEEEEDDE 120 KADECIRWWG NLLEIAEENG QGANSSLFTD EYPPVTDEPT TMFSPGNNYV NQDLFSNLSL 180 DLHDWEL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H00280.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF694994 | 1e-115 | JF694994.1 Mimulus cupreus cell-line inbred line Mcu042 MYB1-like protein 2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012855759.1 | 1e-134 | PREDICTED: myb-like protein AA, partial | ||||
TrEMBL | F5CI40 | 2e-85 | F5CI40_9LAMI; MYB1-like protein 2 (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA19823 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66390.1 | 5e-11 | myb domain protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H00280.1.p |