PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H00102.2.p | ||||||||
Common Name | LOC105969410, MIMGU_mgv1a013642mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 178aa MW: 20490.2 Da PI: 8.0452 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 31 | 74 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Migut.H00102.2.p 31 RGNITAEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 74 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.484 | 1 | 25 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-11 | 11 | 37 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.46E-22 | 11 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.403 | 26 | 80 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-15 | 30 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 31 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-12 | 35 | 74 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 38 | 76 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MICVDFGVGL KRTGKSCRLR WLNYLRPDVR RGNITAEEQL LIMELHAKWG NRWSKIAKHL 60 PGRTDNEIKN YWRTRIQKHI KQADQNCSTG QLADVSNDQA STSQLSSCCP ADNHTVESYS 120 PSSFNANIEP FQPPFPTESN ENLWSMEDLW SCSYSTANKY IYIYIYIHVC VYVYVVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-18 | 12 | 80 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H00102.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU360893 | 2e-36 | EU360893.1 Petunia x hybrida Myb-like transcription factor EOBII mRNA, complete cds. | |||
GenBank | JF793919 | 2e-36 | JF793919.1 Petunia axillaris MYB transcription factor EOBII (EOBII) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012849621.1 | 1e-125 | PREDICTED: myb-related protein 305 | ||||
Swissprot | P81391 | 1e-73 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A022RXN6 | 1e-124 | A0A022RXN6_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 3e-57 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H00102.2.p |
Entrez Gene | 105969410 |
Publications ? help Back to Top | |||
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