PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H00052.1.p | ||||||||
Common Name | LOC105969913, MIMGU_mgv1a018750mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 274aa MW: 31473.9 Da PI: 6.2809 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.9 | 2e-12 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + G +W+ +++ g+ R++k+c++rw +yl Migut.H00052.1.p 14 RGPWTIEEDHKLMTFILNNGIQCWRMVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ E+ ++++++++lG++ W++Ia++++ gRt++++k++w++ Migut.H00052.1.p 67 RGALTEIEENQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110 7888999***************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.317 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-5 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-10 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.40E-4 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.686 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.92E-11 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MGRQPCCDKI GLKRGPWTIE EDHKLMTFIL NNGIQCWRMV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGAL TEIEENQIIE LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKQQQ 120 SLVNDHSSSN NTDQNNDELV VEISRPGKGD QIQPAAAEEE STKESRDGQN SVHHLMNNYD 180 DHETNICTSM TDMDYLWIMS TNQETNNYSS NFPSTASCYT PLFCSEQNSV STNNYHNSTG 240 GEESTITNHE QWVESIDHPM LSWDAINQQL FFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H00052.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012850141.1 | 0.0 | PREDICTED: myb-related protein 315-like | ||||
Swissprot | P81394 | 1e-73 | MYB15_ANTMA; Myb-related protein 315 | ||||
TrEMBL | A0A022RXM1 | 0.0 | A0A022RXM1_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 2e-76 | myb domain protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H00052.1.p |
Entrez Gene | 105969913 |
Publications ? help Back to Top | |||
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