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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.G01132.1.p | ||||||||
Common Name | MIMGU_mgv1a025932mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 121aa MW: 14043.1 Da PI: 6.6687 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 102.6 | 3.5e-32 | 11 | 111 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaC+++ r+C ++C la+yfpae++++f+ v +l+G++n lk+lk+++eeer+++++sl++eA++r++ Pv+G ++ ++kl+ +++++++e Migut.G01132.1.p 11 ACAACQHQSRRCDANCELAKYFPAEKAEDFEDVYHLYGMQNTLKILKSVEEEERDKTIESLIMEAKMRLEYPVHGHFSAVRKLSIEIDKAEKE 103 7******************************************************************************************** PP DUF260 94 lallkeel 101 l+ +++++ Migut.G01132.1.p 104 LEFVRRQI 111 **999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.355 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-29 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MANAVPVVHK ACAACQHQSR RCDANCELAK YFPAEKAEDF EDVYHLYGMQ NTLKILKSVE 60 EEERDKTIES LIMEAKMRLE YPVHGHFSAV RKLSIEIDKA EKELEFVRRQ IQLFRGSDNR 120 A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-17 | 2 | 105 | 2 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-17 | 2 | 105 | 2 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.G01132.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829162.1 | 2e-85 | PREDICTED: LOB domain-containing protein 27-like | ||||
TrEMBL | A0A022PUA5 | 5e-84 | A0A022PUA5_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.G01132.1.p | 2e-85 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2866 | 17 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-26 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Migut.G01132.1.p |