PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.G00778.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21421.6 Da    PI: 8.4506
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.G00778.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.63.3e-23959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krie++s r v f kRrng++KKA+E SvLCd++va iifs++gk+y y+s
  Migut.G00778.1.p  9 KRIEENSARMVCFPKRRNGLIKKAKEFSVLCDVDVAAIIFSKRGKFYQYCS 59
                      79***********************************************96 PP

2K-box34.31e-121101644195
             K-box  41 edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                         +++Ls+ +L  +++qLe++l +iRs+K++l+++  + lq+kek+l+ee+k  +
  Migut.G00778.1.p 110 PRVDQLSVADLGLMQKQLETALMEIRSTKTKLMTDAQSSLQEKEKMLEEEKKHFN 164
                       45689*********************************************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.044161IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-26277IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-213859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.26483173IPR002487Transcription factor, K-box
PfamPF014862.6E-9111165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRKKQDIKR IEENSARMVC FPKRRNGLIK KAKEFSVLCD VDVAAIIFSK RGKFYQYCSA  60
DSMAQVLQQY QSQVKSEKDG CNIEDLYSKN GDYLTYGELL QTVGSELKEP RVDQLSVADL  120
GLMQKQLETA LMEIRSTKTK LMTDAQSSLQ EKEKMLEEEK KHFNEIVEGN NCAKKKKVVV  180
DLNFSADG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-15170169MEF2C
5f28_B2e-15170169MEF2C
5f28_C2e-15170169MEF2C
5f28_D2e-15170169MEF2C
6byy_A2e-15186185MEF2 CHIMERA
6byy_B2e-15186185MEF2 CHIMERA
6byy_C2e-15186185MEF2 CHIMERA
6byy_D2e-15186185MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.G00778.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722420.0KP172242.1 Erythranthe guttata MADS affecting flowering 465 (MAF465) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844490.11e-136PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
TrEMBLA0A022R3T81e-111A0A022R3T8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.22e-37AGAMOUS-like 31