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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Migut.G00778.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family |
MIKC_MADS |
Protein Properties |
Length: 189aa MW: 21421.6 Da PI: 8.4506 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Migut.G00778.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 72.6 | 3.3e-23 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krie++s r v f kRrng++KKA+E SvLCd++va iifs++gk+y y+s
Migut.G00778.1.p 9 KRIEENSARMVCFPKRRNGLIKKAKEFSVLCDVDVAAIIFSKRGKFYQYCS 59
79***********************************************96 PP
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2 | K-box | 34.3 | 1e-12 | 110 | 164 | 41 | 95 |
K-box 41 edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95
+++Ls+ +L +++qLe++l +iRs+K++l+++ + lq+kek+l+ee+k +
Migut.G00778.1.p 110 PRVDQLSVADLGLMQKQLETALMEIRSTKTKLMTDAQSSLQEKEKMLEEEKKHFN 164
45689*********************************************98765 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 189 aa
Download sequence Send
to blast |
MGRKKQDIKR IEENSARMVC FPKRRNGLIK KAKEFSVLCD VDVAAIIFSK RGKFYQYCSA 60 DSMAQVLQQY QSQVKSEKDG CNIEDLYSKN GDYLTYGELL QTVGSELKEP RVDQLSVADL 120 GLMQKQLETA LMEIRSTKTK LMTDAQSSLQ EKEKMLEEEK KHFNEIVEGN NCAKKKKVVV 180 DLNFSADG*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KP172242 | 0.0 | KP172242.1 Erythranthe guttata MADS affecting flowering 465 (MAF465) mRNA, partial cds. |