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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.G00370.1.p | ||||||||
Common Name | MIMGU_mgv1a001692mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | CPP | ||||||||
Protein Properties | Length: 788aa MW: 85484.3 Da PI: 5.1957 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.6 | 3.9e-16 | 484 | 522 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C C dC+Nk Migut.G00370.1.p 484 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCACIDCFNKP 522 589**********************************96 PP | |||||||
2 | TCR | 51.1 | 2.7e-16 | 569 | 607 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN Migut.G00370.1.p 569 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 607 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.7E-18 | 483 | 524 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.06 | 484 | 609 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.0E-12 | 486 | 521 | IPR005172 | CRC domain |
SMART | SM01114 | 7.5E-18 | 569 | 610 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 7.7E-12 | 571 | 607 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence Send to blast |
MGAGVETSSI EEGEVMDTPE RTKNHQIATS VTKFEDSPVF NFLNNLSPIK PVKSAHISQT 60 INPLSFSTIP SVFTSPHVTS LKESRFLRRH QLSDPSKPEF STDRNKAIVD AGPTKKSDEL 120 QENVDTRESD ADVAACHSSY DCSKYIVDFA EGYDFSSPNA SCGLKDKHVS VPFVQNNNME 180 GVSQSQVIDR NQESKTCDWD SLISDATDLL IFESPNDADT YKKSMIDNGM SFYTSMDSDM 240 QNMQSLCAEG SGEQFLEGNE TENLSTQPGE GIEIIENNSE THEIVGGSSM EDNSDEKMDY 300 EHLSGMYRGM RRRCLVFEMS GSRRKHLTQN VGPDSSSSSS SVLMQSDGNM ESSSNGQKLA 360 PIKTANIEST TRCVLPGIGL HLNALASTTK DYKIVGHDSS SASGRLLIGP SSSVNFSPLT 420 IEQDPLTSVL PVTPSEREVV GTEVTVLPPE DACEASGLIG NEEIGHSSPK KKRRRVEQAG 480 EAEACKRCNC KKSKCLKLYC ECFAAGVYCV EPCACIDCFN KPIHEDTVLA TRKQIESRNP 540 LAFAPKVIKG PDSLIETGDD SSKTPASARH KRGCNCKKSG CLKKYCECYQ GGVGCSINCR 600 CEGCKNAFGR KDGSGVMCME TEVEDDETET AEKNIPDRSF RKIVIENDLE HNSDSYVLPA 660 TPLQSVRQSV QLPFSSKNKP PRSSFLTIGG GSSSSFNGRQ GFVRPSFALP PPKFDENKNL 720 ETVIEDNEMP DFLSSPIGGI KSSSPNGKRV SPPHGGGAGA SLSPGLRSSR KLILQSIPSF 780 PSLSSNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 9e-19 | 486 | 606 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 9e-19 | 486 | 606 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 469 | 474 | KKKRRR |
2 | 471 | 475 | KRRRV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.G00370.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012832412.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A022RNB6 | 0.0 | A0A022RNB6_ERYGU; Uncharacterized protein | ||||
STRING | Migut.G00370.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2467 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-146 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Migut.G00370.1.p |