PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.G00275.1.p | ||||||||
Common Name | LOC105974845, MIMGU_mgv1a005385mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | C3H | ||||||||
Protein Properties | Length: 486aa MW: 51569 Da PI: 8.5853 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.9 | 9.9e-10 | 56 | 76 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++++r G+C+yG+rC+F+H++ Migut.G00275.1.p 56 MYYLRIGFCRYGNRCRFNHPR 76 59*****************96 PP | |||||||
2 | zf-CCCH | 36.9 | 6.1e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG Ck+G +Ck+ H++ Migut.G00275.1.p 98 QPICQYYMRTGMCKFGTSCKYDHPK 122 799********************96 PP | |||||||
3 | zf-CCCH | 35.6 | 1.5e-11 | 143 | 168 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++a+tG+Ck+G +Ck++H++ Migut.G00275.1.p 143 GEKECSYYAKTGQCKFGVTCKYHHPQ 168 7899********************97 PP | |||||||
4 | zf-CCCH | 36.7 | 6.9e-12 | 311 | 336 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG Ck+G++Ck++H+ Migut.G00275.1.p 311 PGQPECQYYLRTGDCKFGATCKYHHP 336 5789*********************8 PP | |||||||
5 | zf-CCCH | 36.1 | 1.1e-11 | 359 | 383 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G Ck+G++CkF H++ Migut.G00275.1.p 359 APLCSHYAQNGMCKFGPSCKFDHPM 383 68*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.516 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.37 | 53 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.9E-7 | 56 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 57 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.366 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-8 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 98 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-5 | 100 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.54 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-9 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-5 | 143 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.375 | 310 | 338 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 310 | 337 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 312 | 336 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-5 | 314 | 337 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-4 | 316 | 336 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.375 | 356 | 384 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-7 | 356 | 383 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-8 | 359 | 383 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 359 | 386 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 361 | 381 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MERYGGTQAM EAVQVDPVAE WADPGGETGL EEPMWQLGLG GGPESYPERP DEPDRMYYLR 60 IGFCRYGNRC RFNHPRVRSM VMGALRAGGG EYPERVGQPI CQYYMRTGMC KFGTSCKYDH 120 PKHGLGSSAP AGLNFYGYPL RPGEKECSYY AKTGQCKFGV TCKYHHPQPS GIQMPQAPQP 180 PGPGGPFAGP TQPVYPTGPS PSIQSSQQYS VIQGNWPIAR PAMLPGSYVP GNYGPMLLPP 240 GVVHVPGWTP YQTPASPLAS SSNQPPVGGA QIYGITQLSS SATAYAGPYM PITSAGQSSS 300 SQKEHAFPER PGQPECQYYL RTGDCKFGAT CKYHHPSEWS VPRGNFVLSA MGLPLRPGAP 360 LCSHYAQNGM CKFGPSCKFD HPMKTLSYSP SASSLTDMPV APYPVGSTNA TLAPSSSSSN 420 LRPEILSTFS RDTFSSQISS IKSSSASVGS MLSKSGPITQ SSVHHSAQGS ISSSGGGSGK 480 TPAGA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.G00275.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012855459.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q5NAW2 | 1e-149 | C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6 | ||||
TrEMBL | A0A022Q768 | 0.0 | A0A022Q768_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2412 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-140 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.G00275.1.p |
Entrez Gene | 105974845 |
Publications ? help Back to Top | |||
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