PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.G00186.1.p
Common NameLOC105974845, MIMGU_mgv1a005385mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 486aa    MW: 51380.7 Da    PI: 8.3554
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.G00186.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.93e-125176227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      +++ C +++rtG+C yG+rC+F+H++
  Migut.G00186.1.p 51 DEPDCIYYLRTGFCGYGNRCRFNHPR 76
                      6899********************96 PP
2zf-CCCH36.96.1e-1298122327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C++++rtG Ck+G +Ck+ H++
  Migut.G00186.1.p  98 QPICQYYMRTGMCKFGTSCKYDHPK 122
                       799********************96 PP
3zf-CCCH35.61.5e-11143168227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+++a+tG+Ck+G +Ck++H++
  Migut.G00186.1.p 143 GEKECSYYAKTGQCKFGVTCKYHHPQ 168
                       7899********************97 PP
4zf-CCCH36.76.9e-12311336126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +++++C++++rtG Ck+G++Ck++H+
  Migut.G00186.1.p 311 PGQPECQYYLRTGDCKFGATCKYHHP 336
                       5789*********************8 PP
5zf-CCCH36.11.1e-11359383327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +lC+++a++G Ck+G++CkF H++
  Migut.G00186.1.p 359 APLCSHYAQNGMCKFGPSCKFDHPM 383
                       68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.0E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5584977IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-95176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-65377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55576IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.36695123IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-695122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-698123IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-898122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-5100123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54141169IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5141168IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9143168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5143169IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5310337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375310338IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9312336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5314337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4316336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375356384IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7356383IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-8359383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6359386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5361381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MERYGGTQAM EAVQVDPVAE WAAPGGETGL EEPMWQLGLG GGPESYPERP DEPDCIYYLR  60
TGFCGYGNRC RFNHPRDRSM VMGALRAGGG EYPERVGQPI CQYYMRTGMC KFGTSCKYDH  120
PKHGLGSSAP AGLNFYGYPL RPGEKECSYY AKTGQCKFGV TCKYHHPQPS GIQMPQAPQP  180
PGPGGPFAGP TQPVYPTGPS PSIQSSQQYS VIQGNWPIAR PAMLPGSYVP GNYGPMLLPP  240
GVVHVPGWTP YQTPASPLAS SSNQPPVGGA QIYGITQLSP SATAYAGPYM PITSAGQSSS  300
SQKEHAFPER PGQPECQYYL RTGDCKFGAT CKYHHPSEWS VPRGNFVLSA MGLPLRPGAP  360
LCSHYAQNGM CKFGPSCKFD HPMKTLSYSP SASSLTDMPV APYPVGSTNA TLAPSSSSSN  420
LRPEILSTFS RDTFSSQISS IKSSSASVGS MLSKSGPITQ SSVHHSAQGS ISSSGGGSGK  480
TPGGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.G00186.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858954.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ5NAW21e-153C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A022Q7680.0A0A022Q768_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-144C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]