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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.G00080.1.p | ||||||||
Common Name | MIMGU_mgv1a023570mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | WRKY | ||||||||
Protein Properties | Length: 181aa MW: 19874.1 Da PI: 9.0008 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 110.1 | 1e-34 | 9 | 67 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCts+ C vkk+vers+edp++v++tYeg+H+h+ Migut.G00080.1.p 9 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSTACGVKKRVERSSEDPSIVVTTYEGTHTHP 67 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.8E-34 | 2 | 69 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-30 | 3 | 69 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.087 | 4 | 69 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-40 | 9 | 68 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-28 | 10 | 67 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MTKSEVDHLD DGYRWRKYGQ KAVKNSPFPR SYYRCTSTAC GVKKRVERSS EDPSIVVTTY 60 EGTHTHPSPI TPRGTSFGGV LPETASLIGG GGGGGGGSSL FVMPQIMNSY RQQTQQQPYN 120 IFQNYLAPPL MVSSFGTSSN TFQERRFRPY ASSSSSSSAR DHGLLQDMLP SEMLKELNEE 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-30 | 2 | 69 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-30 | 2 | 69 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.G00080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846599.1 | 1e-132 | PREDICTED: probable WRKY transcription factor 48, partial | ||||
Swissprot | Q9FGZ4 | 7e-48 | WRK48_ARATH; Probable WRKY transcription factor 48 | ||||
TrEMBL | A0A022QP08 | 1e-131 | A0A022QP08_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.G00080.1.p | 1e-131 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 9e-49 | WRKY DNA-binding protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Migut.G00080.1.p |
Publications ? help Back to Top | |||
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