PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

ARF

Protein Properties

Length: 575aa MW: 63942 Da PI: 6.4314

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F01982.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.1	7.8e-24	130	231	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ ++d +g++W++++iyr++++r++lt+GW++Fv+ +++ +gD++vF + Migut.F01982.1.p 130 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILVKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNRKKVVAGDSIVFL--R 218 89**************************986545444..8********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ l+v+++r+ Migut.F01982.1.p 219 AENGDLCVGIRRA 231 488999**997 PP
2	Auxin_resp	111.9	6.4e-37	301	384	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a ++ +FevvY+P ast+eFvv+v+ v++a++v+++ GmRfkmafetedss++++ +Gt+++v+ dp+rWpnS+Wr+L+ Migut.F01982.1.p 301 AVNLAVNGRPFEVVYYPLASTPEFVVRVRAVRAAMRVRWCSGMRFKMAFETEDSSRISWfMGTISSVQVDDPIRWPNSPWRLLQ 384 6788999***************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.29E-29	121	236	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.8E-36	124	233	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.63E-21	129	230	No hit	No description
Pfam	PF02362	6.4E-22	130	231	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.112	130	232	IPR003340	B3 DNA binding domain
SMART	SM01019	9.8E-23	130	232	IPR003340	B3 DNA binding domain
Pfam	PF06507	7.6E-32	301	384	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MINVMHSANK PMNQVEKILD PQLWQACAGG MAQIPPPNSK VYYFPQGHSE HANRHVDFNG 60 FSRIPPIIPC RVSAIKYLAD SDSDEVYAKI RLVPLSMSDY DANDDNNDDN ENGFLGFDKC 120 DEKEKTTNSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI LVKDVHGEVW 180 KFRHIYRGTP RRHLLTTGWS NFVNRKKVVA GDSIVFLRAE NGDLCVGIRR AKRGVNGGQE 240 VVCGWSSSNG ASASSLYRGF SDFLSGNRNN VMCDNSKGIG NCELPGVKER GNVSGESVLE 300 AVNLAVNGRP FEVVYYPLAS TPEFVVRVRA VRAAMRVRWC SGMRFKMAFE TEDSSRISWF 360 MGTISSVQVD DPIRWPNSPW RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PPGGNLPPFS 420 PPRKRPRFPL PSDFLLPTFF NNPLSPISPL CFLPENIPTG VQGARHARFE SQPSDLVHFK 480 KQIQPFDFKL LDDDDDALSR TKPMFRLFGQ PILSAEQISR SYSVDNNTEG YSLSDGNQEN 540 TGNVSNGSGS GVVQNFPPEA SEDECKKLDL GLET*

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MINVMHSANK PMNQVEKILD PQLWQACAGG MAQIPPPNSK VYYFPQGHSE HANRHVDFNG  60
FSRIPPIIPC RVSAIKYLAD SDSDEVYAKI RLVPLSMSDY DANDDNNDDN ENGFLGFDKC  120
DEKEKTTNSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI LVKDVHGEVW  180
KFRHIYRGTP RRHLLTTGWS NFVNRKKVVA GDSIVFLRAE NGDLCVGIRR AKRGVNGGQE  240
VVCGWSSSNG ASASSLYRGF SDFLSGNRNN VMCDNSKGIG NCELPGVKER GNVSGESVLE  300
AVNLAVNGRP FEVVYYPLAS TPEFVVRVRA VRAAMRVRWC SGMRFKMAFE TEDSSRISWF  360
MGTISSVQVD DPIRWPNSPW RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PPGGNLPPFS  420
PPRKRPRFPL PSDFLLPTFF NNPLSPISPL CFLPENIPTG VQGARHARFE SQPSDLVHFK  480
KQIQPFDFKL LDDDDDALSR TKPMFRLFGQ PILSAEQISR SYSVDNNTEG YSLSDGNQEN  540
TGNVSNGSGS GVVQNFPPEA SEDECKKLDL GLET*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	2e-76	18	405	50	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F01982.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012834747.1	0.0	PREDICTED: auxin response factor 18-like
Swissprot	Q653H7	0.0	ARFR_ORYSJ; Auxin response factor 18
TrEMBL	A0A022RHZ4	0.0	A0A022RHZ4_ERYGU; Auxin response factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA592	24	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	auxin response factor 16

Link Out ? help Back to Top
Phytozome	Migut.F01982.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Huang J,Li Z,Zhao D Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep, 2016. 6: p. 29938 [PMID:27444058]