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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F01981.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GATA | ||||||||
Protein Properties | Length: 303aa MW: 33048.9 Da PI: 6.0957 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.4 | 8.6e-18 | 220 | 253 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Migut.F01981.1.p 220 CLHCEITKTPQWRAGPLGPKTLCNACGVRYKSGR 253 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 5.3E-74 | 3 | 293 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.266 | 214 | 250 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.2E-14 | 214 | 264 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.9E-14 | 218 | 251 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 9.03E-15 | 218 | 277 | No hit | No description |
CDD | cd00202 | 3.43E-14 | 219 | 276 | No hit | No description |
Pfam | PF00320 | 2.0E-15 | 220 | 253 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 220 | 245 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGPNFMDEID CGNFFDQIDD LIEFPPDNEC GEDSNLVISS DVRKDFPAWN NDLPDCDPLF 60 SGSHVSSASD LSAELSVPYE DIVQLEWLSN FMEDSFSCKD MTIGKQNSSV PHNQFQTSSP 120 VSVLESSSSS NSTSSSLSPT HRGPQRARSK RARPASFNPR AAIQLISPSP EPNHNFIIES 180 PPVMKKAHKP KPKKIKETPP VDPLSANDEY TPPGQALRKC LHCEITKTPQ WRAGPLGPKT 240 LCNACGVRYK SGRLFPEYRP AASPTFVPSV HSNSHKKVLE MRNTVEPENG ASGPGPITSA 300 SL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F01981.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012834748.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_012834749.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_012834750.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_012834752.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
TrEMBL | A0A022RL36 | 1e-127 | A0A022RL36_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F01981.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2345 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 7e-42 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F01981.1.p |