PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Migut.F01919.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C2H2

Protein Properties

Length: 276aa MW: 29797.6 Da PI: 9.1697

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F01919.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	101	123	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H +H Migut.F01919.1.p 101 YTCKTCNRAFPSFQALGGHRASH 123 9***********99999998887 PP
2	zf-C2H2	14.3	0.00012	184	206	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Migut.F01919.1.p 184 HECSYCGAEFTSGQALGGHMRKH 206 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	8.2E-12	100	125	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.3E-8	100	123	No hit	No description
SMART	SM00355	0.1	101	123	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.346	101	128	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	103	123	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.3E-8	179	206	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.6E-4	182	208	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	3.0E-12	184	208	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.408	184	211	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0084	184	206	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	186	206	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MEAVEEVAAP PCRNNTTDLS PIAKGKRTKR LRTHSPIPFT ITPPPPAADH HPPRRSPTSS 60 EESTTTEEVE TARCLILLSR GHFPPLSPKP TRTGGGGACV YTCKTCNRAF PSFQALGGHR 120 ASHKKPRNDK RAAMFSDEED FPSPSMSSFR NRISPNSLSL QLSNISTTAA FSAAVKSSPS 180 PRIHECSYCG AEFTSGQALG GHMRKHRGGP ILNRSPNNVQ LLLPEASIEE LELAQSKKTR 240 PGPGPGSGLS LDLNLPAPED NHDKEKERPL INCHY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F01919.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012834577.1	0.0	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A022RGY5	1e-119	A0A022RGY5_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	4e-31	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Migut.F01919.1.p