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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F01801.1.p | ||||||||
Common Name | LOC105955660, MIMGU_mgv1a019167mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 20978.8 Da PI: 4.859 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136 | 1.4e-42 | 28 | 128 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C ++Cvlapyfp ++p kfa++h++FGasn++k l++lpe++r da++s+vyeA+ar+rdP+yG++g+i +lq+q+ +l+ae Migut.F01801.1.p 28 PCAACKILRRRCGEKCVLAPYFPPTDPLKFAIAHRVFGASNIIKCLQELPEDQRADAVNSMVYEANARVRDPIYGCTGTICHLQNQIGELQAE 120 7******************************************************************************************** PP DUF260 94 lallkeel 101 la++++e+ Migut.F01801.1.p 121 LAKAHAEI 128 ***99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.813 | 27 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-42 | 28 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEYSRKTNTA GDSPTSSISP DPAVILSPCA ACKILRRRCG EKCVLAPYFP PTDPLKFAIA 60 HRVFGASNII KCLQELPEDQ RADAVNSMVY EANARVRDPI YGCTGTICHL QNQIGELQAE 120 LAKAHAEIFN MQCQNSKLFE FISIRNVLEN SRQAEMQQLP LFDENSSSNF FTDEANLELS 180 NWETLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-42 | 27 | 133 | 10 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-42 | 27 | 133 | 10 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F01801.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012834884.1 | 1e-139 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 5e-68 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A022RJ55 | 1e-138 | A0A022RJ55_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F01801.1.p | 1e-138 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-70 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F01801.1.p |
Entrez Gene | 105955660 |