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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Migut.F01790.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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| Family |
AP2 |
| Protein Properties |
Length: 437aa MW: 47717.5 Da PI: 6.6415 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Migut.F01790.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 54.4 | 3.1e-17 | 158 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g
Migut.F01790.1.p 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTADAAARAYDRAAVKFRG 207
78*******************......55**********************99987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 437 aa
Download sequence Send
to blast |
MLDLNIDAGF SAEEKTDRKE EAENTADADS FTSTTTTTTS ATKNGADELD SDSRAPGDFV 60
STLNFSILGE DVVEIDRDVV NDNTRSELQL FPVGDLYSSP VADKARYWLN LSAATEVSAA 120
GGVELGVLTA VQLPSPNNQV QPPAAAKKGR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG 180
KQVYLGGFDT ADAAARAYDR AAVKFRGVDA DINFNINDYV EDMKQIKNLT KEEFVQTLRR 240
QSSGFARGNS KYRGVTVHKY GQWEAQMGQI LQHKVYDKAT IMNNPRQPFA NVMPSNYKTE 300
ITTTSTDGGS SGNLDLSLGI SFSSDNPLTN YTTKNLHSPY ASNESPDAKR IKVIQPSSSH 360
GLRMTAMCAS MGEATYSAFS PNNKERAVPH FSYNATSSRF SSTTTTTTTT TSPYANSLTS 420
STSTPQFADT SLHRLL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
| Publications
? help Back to Top |
- Lee DY,An G
Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
Plant J., 2012. 69(3): p. 445-61
[PMID:22003982] - Wang L, et al.
Coordinated regulation of vegetative and reproductive branching in rice.
Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
[PMID:26631749] - Dai Z,Wang J,Zhu M,Miao X,Shi Z
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
Front Plant Sci, 2016. 7: p. 1891
[PMID:28066457]
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