PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

ARF

Protein Properties

Length: 565aa MW: 62361.1 Da PI: 5.4035

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F01752.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.9	3.7e-13	137	185	49	99
EE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 49 kliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++iyr++++r++lt+GW++Fv+ ++L +gD+vvF + +++el+++v+r+ Migut.F01752.1.p 137 RHIYRGTPRRHLLTTGWSNFVSRKRLVAGDSVVFL--RAENGELCIGVRRA 185 7899*****************************..449999***996 PP
2	Auxin_resp	112.3	4.8e-37	220	303	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ as + +FevvY+Prast+eFvv+++ v++a++v+++ GmRfkmafetedss++++ +Gt+++v+ dp+rWpnS+Wr+L+ Migut.F01752.1.p 220 AVDLASCGRPFEVVYYPRASTPEFVVRASVVRDAMRVRWCGGMRFKMAFETEDSSRISWfMGTISSVRVDDPIRWPNSPWRLLQ 303 56788999**************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.27E-14	109	185	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.59E-11	117	184	No hit	No description
Gene3D	G3DSA:2.40.330.10	8.3E-14	137	186	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.0E-10	137	185	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.291	146	186	IPR003340	B3 DNA binding domain
Pfam	PF06507	4.9E-32	220	303	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MINVMHSVVN QLEKSLNPQL WHACAGGMAQ TPPLNSGVYY FPQGHAEHAA GNLDSGEFSK 60 IPPLVLCRVL SVKYLADAES DEVFAKIKLV PLGANDEFDS NFDKSGVNEV SISKSNSFAK 120 TLTQSDANNG GGFSVPRHIY RGTPRRHLLT TGWSNFVSRK RLVAGDSVVF LRAENGELCI 180 GVRRAKTGLG VGAEVAAYGW NSGGRDFLGV GERGESVIEA VDLASCGRPF EVVYYPRAST 240 PEFVVRASVV RDAMRVRWCG GMRFKMAFET EDSSRISWFM GTISSVRVDD PIRWPNSPWR 300 LLQVAWDEPD LLQNVKRVSP WLVELVSNIP AIHLSPLSVP RKRPRLPELS GYPVSMPTFF 360 SNNPLSPLCC FSDNNISYSG IQGARHARIL LPSSNFHYNK PQPFDFKPLV DYTSPSQKTE 420 NFEESNEAKK SPLFLLFGQP ILTEEQIIAS NLSDENRENV GDVSNGSVSG VIQNFPLEAS 480 SDGEFSRFEE QKLELGVETT HCKVFTEPED VGRTLDLSIL TSYEELYGKS ESVFCMERSE 540 TSNNVVCSDS SGTTKHTGDE CRVD*

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MINVMHSVVN QLEKSLNPQL WHACAGGMAQ TPPLNSGVYY FPQGHAEHAA GNLDSGEFSK  60
IPPLVLCRVL SVKYLADAES DEVFAKIKLV PLGANDEFDS NFDKSGVNEV SISKSNSFAK  120
TLTQSDANNG GGFSVPRHIY RGTPRRHLLT TGWSNFVSRK RLVAGDSVVF LRAENGELCI  180
GVRRAKTGLG VGAEVAAYGW NSGGRDFLGV GERGESVIEA VDLASCGRPF EVVYYPRAST  240
PEFVVRASVV RDAMRVRWCG GMRFKMAFET EDSSRISWFM GTISSVRVDD PIRWPNSPWR  300
LLQVAWDEPD LLQNVKRVSP WLVELVSNIP AIHLSPLSVP RKRPRLPELS GYPVSMPTFF  360
SNNPLSPLCC FSDNNISYSG IQGARHARIL LPSSNFHYNK PQPFDFKPLV DYTSPSQKTE  420
NFEESNEAKK SPLFLLFGQP ILTEEQIIAS NLSDENRENV GDVSNGSVSG VIQNFPLEAS  480
SDGEFSRFEE QKLELGVETT HCKVFTEPED VGRTLDLSIL TSYEELYGKS ESVFCMERSE  540
TSNNVVCSDS SGTTKHTGDE CRVD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	9e-62	16	324	51	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F01752.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076975.1	0.0	auxin response factor 18-like
Swissprot	Q653H7	0.0	ARFR_ORYSJ; Auxin response factor 18
TrEMBL	A0A022RHG8	0.0	A0A022RHG8_ERYGU; Auxin response factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA592	24	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	auxin response factor 16

Link Out ? help Back to Top
Phytozome	Migut.F01752.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Huang J,Li Z,Zhao D Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep, 2016. 6: p. 29938 [PMID:27444058]