PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C2H2

Protein Properties

Length: 292aa MW: 31729.7 Da PI: 9.6984

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F01698.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	118	140	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cg++F++ L H +H Migut.F01698.1.p 118 YACKTCGRVFPSFQALGGHRASH 140 89**********99999998887 PP
2	zf-C2H2	14.7	9.1e-05	197	219	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Migut.F01698.1.p 197 HVCSYCGADFSSGQALGGHMRRH 219 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.54E-8	117	140	No hit	No description
PROSITE profile	PS50157	10.658	118	145	IPR007087	Zinc finger, C2H2
Pfam	PF13912	9.0E-12	118	142	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.091	118	140	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	120	140	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.54E-8	192	219	No hit	No description
Pfam	PF13912	1.8E-11	197	221	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.432	197	219	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.027	197	219	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	199	219	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
PAIAKGKRTK RQRLPLPTLI TTTTCTTNIN RLSPSFSSAA ATSSEESTTT EEEDTARCLI 60 LLARGGGGHF QTRPLDKADG DDEDGDRHDY IFKQNSSRKR RAAETNAAGY KGGGACMYAC 120 KTCGRVFPSF QALGGHRASH KKPRNEKRTV IFFSDEEFLH KSQKRLTPPP PTSLSLQLSN 180 LSAAAAPRST FPSPKIHVCS YCGADFSSGQ ALGGHMRRHR PILTLSPSNI VAARARGGAS 240 VDEPEPEPEP EEWMKGRNGL TLDLNLPAPD DENQRRKEGG APEKLKVQLF F*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F01698.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012843339.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A022R0Z3	0.0	A0A022R0Z3_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-28	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Migut.F01698.1.p
Entrez Gene	105963478