PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01688.1.p
Common NameLOC105963462, MIMGU_mgv1a007979mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 390aa    MW: 43816.3 Da    PI: 4.987
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01688.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-52271541128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       l+pGfrFhPtdeelv +yL++kv gk++++ e+++e+d+yk+ePw+L   ++v++++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++
  Migut.F01688.1.p  27 LAPGFRFHPTDEELVRYYLRRKVCGKPFRF-EAVTEIDVYKSEPWELAdySSVNTRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRS 118
                       579**************************9.89**************84347777888*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v + k+e++g+kktLvf++grap+g++t+Wvmheyrl
  Migut.F01688.1.p 119 VRH-KNETIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 154
                       ***.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-6124177IPR003441NAC domain
PROSITE profilePS5100558.07227177IPR003441NAC domain
PfamPF023651.3E-2829154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEMGQELVVA PAAATAAVKG APPPTSLAPG FRFHPTDEEL VRYYLRRKVC GKPFRFEAVT  60
EIDVYKSEPW ELADYSSVNT RDLEWYFFSP VDRKYGNGSR LNRATGKGYW KATGKDRSVR  120
HKNETIGMKK TLVFHSGRAP DGKRTNWVMH EYRLCDAELE TAGIPQDAFV LCRIFQKSGL  180
GPPNGDRYAP FVEEEWGEDA ALVISGEEAE DDVANADEPR VECTDLDQDT PPLSIALPQI  240
ESEILPFTCK RELVDPTPLS LSKSNKRSKH EDPNSTKPNG SEDSTTTSLP EPSMMMTKNT  300
SSGTLLEFPL LQPRCSSKET TFDSSNLEKS VPPGYLKFIN NLENEILNVS MEKDLLKIEV  360
MRAQAMISHF QSRIETLTEE NESFKRRFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-512617716165NO APICAL MERISTEM PROTEIN
1ut4_B7e-512617716165NO APICAL MERISTEM PROTEIN
1ut7_A7e-512617716165NO APICAL MERISTEM PROTEIN
1ut7_B7e-512617716165NO APICAL MERISTEM PROTEIN
3swm_A6e-512617719168NAC domain-containing protein 19
3swm_B6e-512617719168NAC domain-containing protein 19
3swm_C6e-512617719168NAC domain-containing protein 19
3swm_D6e-512617719168NAC domain-containing protein 19
3swp_A6e-512617719168NAC domain-containing protein 19
3swp_B6e-512617719168NAC domain-containing protein 19
3swp_C6e-512617719168NAC domain-containing protein 19
3swp_D6e-512617719168NAC domain-containing protein 19
4dul_A7e-512617716165NAC domain-containing protein 19
4dul_B7e-512617716165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F01688.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1825780.0AC182578.2 Erythranthe guttata clone MGBa-9K21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843322.10.0PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9SQX91e-106NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A022R1040.0A0A022R104_ERYGU; Uncharacterized protein
STRINGMigut.F01688.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31402448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.14e-96NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]