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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F01550.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24279.1 Da PI: 10.2251 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47 | 3.2e-15 | 25 | 59 | 15 | 49 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyey 49 kRr+g++KKA+ELS+LC+ae v++fs++ k + y Migut.F01550.1.p 25 KRRAGLFKKASELSTLCGAESVVVVFSPREKPHSY 59 9****************************998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.9E-9 | 6 | 62 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-16 | 24 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-16 | 24 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-9 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.801 | 25 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-9 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSSSNQNNSS ENNPNPQIKG KGPQKRRAGL FKKASELSTL CGAESVVVVF SPREKPHSYG 60 NPSVKTVVDW FFNPNRNPNS RNEAHQLQRA AQGDAIMHHR NQEVGSWEAQ LKQEKERRKA 120 NENLSTAPQC HRWCPTNIDD LNYQQLDELK RSIMKFKQSF EFYGNNEPLM VQGGSSNIPS 180 TQFYGGIGTS NPRVNASSSV FFFTVTLHFI RKKY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F01550.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842446.1 | 1e-160 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A022R2T5 | 1e-142 | A0A022R2T5_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA19795 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-19 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F01550.1.p |