PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F01247.1.p | ||||||||
Common Name | LOC105960388, MIMGU_mgv1a009267mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bZIP | ||||||||
Protein Properties | Length: 348aa MW: 37796.5 Da PI: 5.4204 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.3 | 9.2e-10 | 153 | 207 | 5 | 59 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + + l Migut.F01247.1.p 153 KRAKRILANRQSAARSKERKSRYISELERKVQTLQTEATTLSAQLTLFQRDTSGL 207 9****************************************99988776666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-14 | 149 | 213 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.772 | 151 | 214 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.0E-10 | 153 | 208 | No hit | No description |
SuperFamily | SSF57959 | 1.34E-10 | 153 | 204 | No hit | No description |
Pfam | PF00170 | 9.8E-9 | 153 | 207 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.76E-22 | 154 | 203 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MQDPNSKHSM NQAPPFSAAM RPSLHRRAHS EVNFRLPEDL DLVSDHFDAP AGSFEEMGSE 60 DDLFSTYMDI EKLSGGPAAG AGSGVADSAF DNAGGGPSGE DGGGGGGGGD GRPRHRHSNS 120 VDSSGFLFNE NGIEAKKAMA PEKLAELWAL DPKRAKRILA NRQSAARSKE RKSRYISELE 180 RKVQTLQTEA TTLSAQLTLF QRDTSGLSNE NTELKLRLQA MEQQAQLRDA LNEALKQEVD 240 RLRVATGEMS TSSETYDLAM QHVQYNQTVY YTPPGGGMNE NSRYMQMQQF HNQQISGGGN 300 NNHLRDAFNQ QDPLGCFQGL DISNRGSQHL VKSEGPSISA TESSTTL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F01247.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012840002.1 | 0.0 | PREDICTED: transcription factor RF2b-like | ||||
Swissprot | Q6S4P4 | 1e-103 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A022R4L9 | 0.0 | A0A022R4L9_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F01247.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3425 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 4e-99 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.F01247.1.p |
Entrez Gene | 105960388 |
Publications ? help Back to Top | |||
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