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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F00778.1.p | ||||||||
Common Name | MIMGU_mgv1a002248mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GRAS | ||||||||
Protein Properties | Length: 698aa MW: 78926.4 Da PI: 5.7792 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 389.6 | 3.5e-119 | 323 | 694 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL+ cA+av+++d + a+++L+++++++s +gd mqRla+yf+++L+ar+a+s++++yk+l +ts s+ l+a++++ ++P+ k+ Migut.F00778.1.p 323 LRTLLTLCAQAVAADDRRTANEFLKQIRQNSSMTGDGMQRLAHYFANGLEARMAGSGTQIYKSLLNLPTS---ASDILKAYHTYLATCPFKKI 412 5789************************************************************999998...89****************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 sh+ aN++I++ ++++r+HiiDf+i +G+QWp++lq L+sRp+gpp+lRiTg++ p +g +e++eetg+rLa++A++++vpfefn+ +a+ Migut.F00778.1.p 413 SHFFANKTIMNVSQKATRLHIIDFGILYGFQWPCFLQRLSSRPGGPPKLRITGIDLPCPGfrPSERVEETGRRLASYAKTFKVPFEFNA-IAQ 504 *********************************************************99999***************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e++++e+L+++++E l+Vn+ ++ +llde+v ++s+r+ vL+l+++++P v+v+ + +n++ F +rf eal +ys++fd+le+++pr Migut.F00778.1.p 505 KWETIKIEDLKIDEDELLVVNCLYRFRNLLDETVIVNSPRNIVLNLIRKMNPAVFVLGIVNGAYNAPFFITRFREALFHYSSFFDMLEENIPR 597 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e +er+ +Er ++gre++nv+acegaer+er et+++W+ r ++GF+++pl+++++k a +++ + + + ++e+ g++++gWk+r ++ + Migut.F00778.1.p 598 EIHERMLLERIVFGREAMNVIACEGAERIERPETYKQWQVRNIRVGFEQLPLDKEIMKMALNRVKTSYHKDFVIDEDGGWMLQGWKGRIVYGL 690 ********************************************************************888********************** PP GRAS 371 SaWr 374 S+Wr Migut.F00778.1.p 691 SSWR 694 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.215 | 297 | 674 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-116 | 323 | 694 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MVMDQNFRRY IGPISEIGFT NQAVPFLGDP NSANNLRVCD RFLNGNIADN WLISSQIGLD 60 SQSQVQSSEG DPPEEFDFSD IVLRYISYIL MEEEVEDKTC MFQESAALQA AEKSFYDLLG 120 EQSSIESPDE KFLEESGGYG YSDDAESLCP DWHPRDNITS QSYYSSSSTS SNNGGGTTII 180 DGPIDSPVST LKIPDMFLDI ESALQFKKGV EEASKFLPGG INLVKVEKKL DSNEEFLDLS 240 RGKKNHHRNS SEEERSSKQS AICSESSVSS DMFDKVLLCS GGKNESALRK ELSEATSQNV 300 QQSNITKSTR GKKQGSKRNV VDLRTLLTLC AQAVAADDRR TANEFLKQIR QNSSMTGDGM 360 QRLAHYFANG LEARMAGSGT QIYKSLLNLP TSASDILKAY HTYLATCPFK KISHFFANKT 420 IMNVSQKATR LHIIDFGILY GFQWPCFLQR LSSRPGGPPK LRITGIDLPC PGFRPSERVE 480 ETGRRLASYA KTFKVPFEFN AIAQKWETIK IEDLKIDEDE LLVVNCLYRF RNLLDETVIV 540 NSPRNIVLNL IRKMNPAVFV LGIVNGAYNA PFFITRFREA LFHYSSFFDM LEENIPREIH 600 ERMLLERIVF GREAMNVIAC EGAERIERPE TYKQWQVRNI RVGFEQLPLD KEIMKMALNR 660 VKTSYHKDFV IDEDGGWMLQ GWKGRIVYGL SSWRPVY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-53 | 323 | 694 | 5 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F00778.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858558.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A022Q080 | 0.0 | A0A022Q080_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F00778.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F00778.1.p |
Publications ? help Back to Top | |||
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