PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00778.1.p
Common NameMIMGU_mgv1a002248mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 698aa    MW: 78926.4 Da    PI: 5.7792
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00778.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.63.5e-1193236941374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+av+++d + a+++L+++++++s +gd mqRla+yf+++L+ar+a+s++++yk+l   +ts    s+ l+a++++  ++P+ k+
  Migut.F00778.1.p 323 LRTLLTLCAQAVAADDRRTANEFLKQIRQNSSMTGDGMQRLAHYFANGLEARMAGSGTQIYKSLLNLPTS---ASDILKAYHTYLATCPFKKI 412
                       5789************************************************************999998...89****************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       sh+ aN++I++  ++++r+HiiDf+i +G+QWp++lq L+sRp+gpp+lRiTg++ p +g   +e++eetg+rLa++A++++vpfefn+ +a+
  Migut.F00778.1.p 413 SHFFANKTIMNVSQKATRLHIIDFGILYGFQWPCFLQRLSSRPGGPPKLRITGIDLPCPGfrPSERVEETGRRLASYAKTFKVPFEFNA-IAQ 504
                       *********************************************************99999***************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       ++e++++e+L+++++E l+Vn+ ++  +llde+v ++s+r+ vL+l+++++P v+v+   +  +n++ F +rf eal +ys++fd+le+++pr
  Migut.F00778.1.p 505 KWETIKIEDLKIDEDELLVVNCLYRFRNLLDETVIVNSPRNIVLNLIRKMNPAVFVLGIVNGAYNAPFFITRFREALFHYSSFFDMLEENIPR 597
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       e +er+ +Er ++gre++nv+acegaer+er et+++W+ r  ++GF+++pl+++++k a   +++ + + + ++e+ g++++gWk+r ++ +
  Migut.F00778.1.p 598 EIHERMLLERIVFGREAMNVIACEGAERIERPETYKQWQVRNIRVGFEQLPLDKEIMKMALNRVKTSYHKDFVIDEDGGWMLQGWKGRIVYGL 690
                       ********************************************************************888********************** PP

              GRAS 371 SaWr 374
                       S+Wr
  Migut.F00778.1.p 691 SSWR 694
                       ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.215297674IPR005202Transcription factor GRAS
PfamPF035141.2E-116323694IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MVMDQNFRRY IGPISEIGFT NQAVPFLGDP NSANNLRVCD RFLNGNIADN WLISSQIGLD  60
SQSQVQSSEG DPPEEFDFSD IVLRYISYIL MEEEVEDKTC MFQESAALQA AEKSFYDLLG  120
EQSSIESPDE KFLEESGGYG YSDDAESLCP DWHPRDNITS QSYYSSSSTS SNNGGGTTII  180
DGPIDSPVST LKIPDMFLDI ESALQFKKGV EEASKFLPGG INLVKVEKKL DSNEEFLDLS  240
RGKKNHHRNS SEEERSSKQS AICSESSVSS DMFDKVLLCS GGKNESALRK ELSEATSQNV  300
QQSNITKSTR GKKQGSKRNV VDLRTLLTLC AQAVAADDRR TANEFLKQIR QNSSMTGDGM  360
QRLAHYFANG LEARMAGSGT QIYKSLLNLP TSASDILKAY HTYLATCPFK KISHFFANKT  420
IMNVSQKATR LHIIDFGILY GFQWPCFLQR LSSRPGGPPK LRITGIDLPC PGFRPSERVE  480
ETGRRLASYA KTFKVPFEFN AIAQKWETIK IEDLKIDEDE LLVVNCLYRF RNLLDETVIV  540
NSPRNIVLNL IRKMNPAVFV LGIVNGAYNA PFFITRFREA LFHYSSFFDM LEENIPREIH  600
ERMLLERIVF GREAMNVIAC EGAERIERPE TYKQWQVRNI RVGFEQLPLD KEIMKMALNR  660
VKTSYHKDFV IDEDGGWMLQ GWKGRIVYGL SSWRPVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-533236945375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00778.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858558.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A022Q0800.0A0A022Q080_ERYGU; Uncharacterized protein
STRINGMigut.F00778.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]