PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

GRAS

Protein Properties

Length: 698aa MW: 78926.4 Da PI: 5.7792

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F00778.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	389.6	3.5e-119	323	694	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL+ cA+av+++d + a+++L+++++++s +gd mqRla+yf+++L+ar+a+s++++yk+l +ts s+ l+a++++ ++P+ k+ Migut.F00778.1.p 323 LRTLLTLCAQAVAADDRRTANEFLKQIRQNSSMTGDGMQRLAHYFANGLEARMAGSGTQIYKSLLNLPTS---ASDILKAYHTYLATCPFKKI 412 5789**********************************************************999998...89************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 sh+ aN++I++ ++++r+HiiDf+i +G+QWp++lq L+sRp+gpp+lRiTg++ p +g +e++eetg+rLa++A++++vpfefn+ +a+ Migut.F00778.1.p 413 SHFFANKTIMNVSQKATRLHIIDFGILYGFQWPCFLQRLSSRPGGPPKLRITGIDLPCPGfrPSERVEETGRRLASYAKTFKVPFEFNA-IAQ 504 *****************************************************99999***********************.7 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e++++e+L+++++E l+Vn+ ++ +llde+v ++s+r+ vL+l+++++P v+v+ + +n++ F +rf eal +ys++fd+le+++pr Migut.F00778.1.p 505 KWETIKIEDLKIDEDELLVVNCLYRFRNLLDETVIVNSPRNIVLNLIRKMNPAVFVLGIVNGAYNAPFFITRFREALFHYSSFFDMLEENIPR 597 ******************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e +er+ +Er ++gre++nv+acegaer+er et+++W+ r ++GF+++pl+++++k a +++ + + + ++e+ g++++gWk+r ++ + Migut.F00778.1.p 598 EIHERMLLERIVFGREAMNVIACEGAERIERPETYKQWQVRNIRVGFEQLPLDKEIMKMALNRVKTSYHKDFVIDEDGGWMLQGWKGRIVYGL 690 ****************************************************************888****************** PP GRAS 371 SaWr 374 S+Wr Migut.F00778.1.p 691 SSWR 694 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.215	297	674	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-116	323	694	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MVMDQNFRRY IGPISEIGFT NQAVPFLGDP NSANNLRVCD RFLNGNIADN WLISSQIGLD 60 SQSQVQSSEG DPPEEFDFSD IVLRYISYIL MEEEVEDKTC MFQESAALQA AEKSFYDLLG 120 EQSSIESPDE KFLEESGGYG YSDDAESLCP DWHPRDNITS QSYYSSSSTS SNNGGGTTII 180 DGPIDSPVST LKIPDMFLDI ESALQFKKGV EEASKFLPGG INLVKVEKKL DSNEEFLDLS 240 RGKKNHHRNS SEEERSSKQS AICSESSVSS DMFDKVLLCS GGKNESALRK ELSEATSQNV 300 QQSNITKSTR GKKQGSKRNV VDLRTLLTLC AQAVAADDRR TANEFLKQIR QNSSMTGDGM 360 QRLAHYFANG LEARMAGSGT QIYKSLLNLP TSASDILKAY HTYLATCPFK KISHFFANKT 420 IMNVSQKATR LHIIDFGILY GFQWPCFLQR LSSRPGGPPK LRITGIDLPC PGFRPSERVE 480 ETGRRLASYA KTFKVPFEFN AIAQKWETIK IEDLKIDEDE LLVVNCLYRF RNLLDETVIV 540 NSPRNIVLNL IRKMNPAVFV LGIVNGAYNA PFFITRFREA LFHYSSFFDM LEENIPREIH 600 ERMLLERIVF GREAMNVIAC EGAERIERPE TYKQWQVRNI RVGFEQLPLD KEIMKMALNR 660 VKTSYHKDFV IDEDGGWMLQ GWKGRIVYGL SSWRPVY*

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MVMDQNFRRY IGPISEIGFT NQAVPFLGDP NSANNLRVCD RFLNGNIADN WLISSQIGLD  60
SQSQVQSSEG DPPEEFDFSD IVLRYISYIL MEEEVEDKTC MFQESAALQA AEKSFYDLLG  120
EQSSIESPDE KFLEESGGYG YSDDAESLCP DWHPRDNITS QSYYSSSSTS SNNGGGTTII  180
DGPIDSPVST LKIPDMFLDI ESALQFKKGV EEASKFLPGG INLVKVEKKL DSNEEFLDLS  240
RGKKNHHRNS SEEERSSKQS AICSESSVSS DMFDKVLLCS GGKNESALRK ELSEATSQNV  300
QQSNITKSTR GKKQGSKRNV VDLRTLLTLC AQAVAADDRR TANEFLKQIR QNSSMTGDGM  360
QRLAHYFANG LEARMAGSGT QIYKSLLNLP TSASDILKAY HTYLATCPFK KISHFFANKT  420
IMNVSQKATR LHIIDFGILY GFQWPCFLQR LSSRPGGPPK LRITGIDLPC PGFRPSERVE  480
ETGRRLASYA KTFKVPFEFN AIAQKWETIK IEDLKIDEDE LLVVNCLYRF RNLLDETVIV  540
NSPRNIVLNL IRKMNPAVFV LGIVNGAYNA PFFITRFREA LFHYSSFFDM LEENIPREIH  600
ERMLLERIVF GREAMNVIAC EGAERIERPE TYKQWQVRNI RVGFEQLPLD KEIMKMALNR  660
VKTSYHKDFV IDEDGGWMLQ GWKGRIVYGL SSWRPVY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-53	323	694	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F00778.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858558.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A022Q080	0.0	A0A022Q080_ERYGU; Uncharacterized protein
STRING	Migut.F00778.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Migut.F00778.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]