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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F00722.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 413aa MW: 45335 Da PI: 5.3891 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2.1e-16 | 33 | 78 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W+ +Ed +l +v ++G ++W++Iar ++ gR++k+c++rw + Migut.F00722.1.p 33 RGPWSDQEDAILSALVGKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 78 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.7e-17 | 85 | 129 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ Migut.F00722.1.p 85 RKPFTDEEDRIILEAHAVYGNK-WASIAKILP-GRTDNAIKNHWNST 129 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.474 | 28 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.93E-30 | 30 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-14 | 32 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-15 | 33 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-24 | 34 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.10E-13 | 35 | 77 | No hit | No description |
PROSITE profile | PS51294 | 25.522 | 80 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-16 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-15 | 85 | 129 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 87 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.29E-13 | 87 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MMTEEEMREV EGQVVVEAMA VEGGVEEAKG KIRGPWSDQE DAILSALVGK FGARNWSLIA 60 RGIPGRSGKS CRLRWCNQLD PCVMRKPFTD EEDRIILEAH AVYGNKWASI AKILPGRTDN 120 AIKNHWNSTL RRKCGFPRRS STPLTVQMLP NISIDWTKAS SEDTLSGGGP RNSFKPSEEV 180 ETRSVSINHP KNPEYETLQI GGPSTSALEI DEVGLIEDLE KKYEEDKTQT CVPKQNPSVS 240 RPIAKVGGFD IYNSCSDEST FSGAVLPITG SMIRPSKMDL GICKKFLDVG ASCDGDRIIP 300 LQCGYGCCSN STTHSSRSSL LGPEFVDYEE TPSFSSHELT SAAADLNNMA WIRSGLENSR 360 NAKRQKGSED SVKNDQMIFD RQNVFTGVTR EVGTTKMSMP TFTLQTQVEG LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-39 | 32 | 133 | 6 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F00722.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858381.1 | 0.0 | PREDICTED: transcriptional activator Myb-like | ||||
TrEMBL | A0A022PUC5 | 1e-165 | A0A022PUC5_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2611 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 9e-85 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F00722.1.p |