PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 186aa MW: 20532.2 Da PI: 6.9258

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F00659.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.5	1.5e-40	13	111	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+l+r+C+++C +apyf +++pkkfa vhk+FGasnv+k+l+++ ee+red+++slvyeAe+r++dPvyG++g i +lq+++ +l+++ Migut.F00659.1.p 13 SCAACKFLKRRCTPNCQFAPYFRSDEPKKFAKVHKVFGASNVSKILNEVAEEQREDTVNSLVYEAEVRLQDPVYGCIGAIASLQHRMVELQHD 105 6*******************************************************************************************9 PP DUF260 94 lallke 99 l l+++ Migut.F00659.1.p 106 LLLARA 111 988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.18	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-40	13	109	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MRSTHQEPRS SSSCAACKFL KRRCTPNCQF APYFRSDEPK KFAKVHKVFG ASNVSKILNE 60 VAEEQREDTV NSLVYEAEVR LQDPVYGCIG AIASLQHRMV ELQHDLLLAR ARLACCAADN 120 HHHQQQQQLQ LHQQQPSDLS FLDPFVQMPG IGGGGGGGVA VGGFDGDQNM LPFDQFITTS 180 PFQFP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-42	8	113	6	111	LOB family transfactor Ramosa2.1
5ly0_B	8e-42	8	113	6	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F00659.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858218.1	1e-136	PREDICTED: LOB domain-containing protein 21
Swissprot	Q9SRL8	3e-58	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A022PYS9	2e-79	A0A022PYS9_ERYGU; Uncharacterized protein
STRING	Migut.F00659.1.p	1e-136	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	7e-57	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Migut.F00659.1.p

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]