PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00636.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 201aa    MW: 22211 Da    PI: 6.7037
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00636.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.82.1e-4471061100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r d++sslvyeA+arardPvyG+vg i+ lq+q++ql+ +
  Migut.F00636.1.p   7 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRGDTVSSLVYEANARARDPVYGCVGAISYLQNQVAQLQMQ 99 
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Migut.F00636.1.p 100 LAMAQAE 106
                       **99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.7386107IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-447104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGSGSSPCAS CKLLRRRCAK DCIFAPYFPS DDPHKFAIVH KVFGASNVSK MLQELPVHQR  60
GDTVSSLVYE ANARARDPVY GCVGAISYLQ NQVAQLQMQL AMAQAEMLCI QMQAQAQEQN  120
HHNQSINQLQ LHQAPLLLLD QTADIDVGDD KSTSSFYLQN HHQLLNFAAA NSNINANTNN  180
NNVIYDSFKK ESLYGYDMVS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4721087112LOB family transfactor Ramosa2.1
5ly0_B2e-4721087112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00636.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858386.11e-148PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW31e-75LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A022PX251e-104A0A022PX25_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.F00636.1.p1e-147(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-57LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]