PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00585.1.p
Common NameLOC105977466, MIMGU_mgv1a020273mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 239aa    MW: 25897.2 Da    PI: 7.9797
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00585.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.33.9e-41531531101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++C+++pyf  ++p+kf +vhk+FGasnv+k+l +++e++r da++slvyeA++r+rdPvyG++g i++lq+q+e l+ae
  Migut.F00585.1.p  53 PCAACKLLRRRCAQECPFSPYFSPHEPHKFDAVHKVFGASNVSKMLLEVHESQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIEFLHAE 145
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       l+++++e+
  Migut.F00585.1.p 146 LNAVRNEI 153
                       ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.8552153IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-4053150IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSTERERFDE EIAKKIKRES DNAFPHHHQN IMGGGGRRHI SAAAAGTLNT VTPCAACKLL  60
RRRCAQECPF SPYFSPHEPH KFDAVHKVFG ASNVSKMLLE VHESQRADAA NSLVYEANVR  120
LRDPVYGCMG AISALQHQIE FLHAELNAVR NEILKYKQYN TTETNTLLHS SSSSSHITLH  180
PSGAVSIAAP PPPTPPPPPP SLPIRPLLSS SPMYNPVTSS SSGAAGGDFS TENITYFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-40431561114LOB family transfactor Ramosa2.1
5ly0_B3e-40431561114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00585.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858226.11e-177PREDICTED: LOB domain-containing protein 15
SwissprotQ8L5T52e-76LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A022PX631e-176A0A022PX63_ERYGU; Uncharacterized protein
STRINGMigut.F00585.1.p1e-176(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-77LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]