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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F00357.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HSF | ||||||||
Protein Properties | Length: 347aa MW: 38272.8 Da PI: 5.1719 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 117.6 | 7.3e-37 | 27 | 117 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++++d +++++isw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F+k++k+ll Migut.F00357.1.p 27 FLTKTYQLVDDTAIDDIISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVMPDR---------WEFSNECFRKDEKKLL 110 9*****************************************************************99.........**************** PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 ++i+r+k Migut.F00357.1.p 111 CEIQRRK 117 *****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-38 | 17 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.9E-56 | 23 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.08E-35 | 24 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.2E-32 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-20 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-20 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.20.5.170 | 8.4E-4 | 175 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MTPPPVDRTG GGESTAADMP RSLPTPFLTK TYQLVDDTAI DDIISWNEDG STFIVWNPTE 60 FARDLLPKYF KHNNFSSFVR QLNTYGFRKV MPDRWEFSNE CFRKDEKKLL CEIQRRKIAT 120 PPPTAAATLC AAVSEHLTPA APQRTVSPSD SGEEQVLSSS NSPGTVREFS GSTAELIGEN 180 ERLRKQNVQL SKELDQMKSL CNNIYALMSN FAGTNKHNSS SNSNDRPGLS CKQYMAENGV 240 KPLDLLPMTR FCEEIQTAVV AAAAHGGEAC NIRSAAEEIG ARLFGVPIGL KRGREGEGSS 300 ADHEMELQLQ QPGLDIKPEP MDEDNSGDDL AEASWLRRSN SRNRRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-23 | 16 | 116 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-23 | 16 | 116 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-23 | 16 | 116 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00575 | DAP | Transfer from AT5G62020 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F00357.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012852099.1 | 0.0 | PREDICTED: heat stress transcription factor B-2a | ||||
TrEMBL | A0A4D9BG03 | 1e-163 | A0A4D9BG03_SALSN; Heat shock transcription factor, other eukaryote | ||||
STRING | Migut.F00357.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2182 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 8e-90 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | Migut.F00357.1.p |