PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00136.1.p
Common NameLOC105963709, MIMGU_mgv1a003123mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 607aa    MW: 68424.2 Da    PI: 4.7266
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00136.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-5291371128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lp+G+rF+Ptdeel+++yL+ k+++++ ++ +vi+e+d++k+ePwdLp +  +++ ++ew+fF+++d+ky++g+r nrat++gyWkatgkd++
  Migut.F00136.1.p   9 LPVGYRFRPTDEELIDHYLRLKINRHDKDV-SVIREIDVCKWEPWDLPdMsVIESFDNEWFFFCPKDRKYQNGQRLNRATEKGYWKATGKDRN 100
                       799************************999.99**************96347777889*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++s+kg+++g+kktLvfy+grap+g++t+Wv+heyr+
  Migut.F00136.1.p 101 ITSRKGAKIGMKKTLVFYTGRAPDGKRTNWVIHEYRA 137
                       ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-575160IPR003441NAC domain
PROSITE profilePS5100553.9139160IPR003441NAC domain
PfamPF023651.1E-2610136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MTVLPAKALP VGYRFRPTDE ELIDHYLRLK INRHDKDVSV IREIDVCKWE PWDLPDMSVI  60
ESFDNEWFFF CPKDRKYQNG QRLNRATEKG YWKATGKDRN ITSRKGAKIG MKKTLVFYTG  120
RAPDGKRTNW VIHEYRATDK SLDGTHPGQG AFVLLRLFRK AELKQDEIAE SSNINEAEEI  180
VLSPTVVKFS AEDEKSESLT PSSTVMPEVQ PSSAESCPTP ALSFENYLAD TPLPIDGQSD  240
NWIADEMDVN ALDTTYILPN PELEKLLQDF CPPLQQTSDS KIFSPLHSQM QSELGNPYFY  300
NSFTGDISNE QHNIPLQYGT NASDINEFLN SVLIDPEEQN VGDIYSTSSL DNRMLQWVKE  360
SNSCSESESE VSQRQVDQIM LQSEWIGENT KQEFPFQSEV TSEMAYVGQM AHNSHVSNDY  420
GNRNLAFAHN SYSVPNDFTA NSGVHQMFNL SNIEEGGGYI PPTVGDATSG TGIIRRTRQI  480
PNQIDAQNPA NHGTAPRRIR LQKKFQVGPV QCRLPSESTE VEFVHHQGKE TTQDEKATNT  540
NTVDEVKEST SNEANKDVQY HDSTTLKTMV GEPETVTFVR SRIMPKVLVA VSLVVVLVAI  600
WGYYVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-41816016165NO APICAL MERISTEM PROTEIN
1ut4_B2e-41816016165NO APICAL MERISTEM PROTEIN
1ut7_A2e-41816016165NO APICAL MERISTEM PROTEIN
1ut7_B2e-41816016165NO APICAL MERISTEM PROTEIN
3swm_A2e-41816019168NAC domain-containing protein 19
3swm_B2e-41816019168NAC domain-containing protein 19
3swm_C2e-41816019168NAC domain-containing protein 19
3swm_D2e-41816019168NAC domain-containing protein 19
3swp_A2e-41816019168NAC domain-containing protein 19
3swp_B2e-41816019168NAC domain-containing protein 19
3swp_C2e-41816019168NAC domain-containing protein 19
3swp_D2e-41816019168NAC domain-containing protein 19
4dul_A2e-41816016165NAC domain-containing protein 19
4dul_B2e-41816016165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00136.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843602.10.0PREDICTED: NAC domain-containing protein 62
SwissprotQ9SCK64e-87NAC62_ARATH; NAC domain-containing protein 62
TrEMBLA0A022RXV20.0A0A022RXV2_ERYGU; Uncharacterized protein
STRINGMigut.F00136.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.12e-89NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]