PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E01688.1.p | ||||||||
Common Name | MIMGU_mgv1a018163mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 247aa MW: 26953.2 Da PI: 5.1345 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 120.5 | 7.5e-38 | 64 | 155 | 2 | 93 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 re d+++P +n++rim+ vlP + ki++dake +q cvsefi f+t++a+++c+r+ rkt++++d+l a+++lGf dy++pl v+l+k r Migut.E01688.1.p 64 READQYMPTTNIARIMRCVLPDHVKIADDAKEAIQVCVSEFINFITADANNRCHRDYRKTVTPEDVLAAMTSLGFGDYIDPLIVFLNKNRAQ 155 899*************************************************************************************9964 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.8E-39 | 57 | 162 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.61E-29 | 67 | 161 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-19 | 69 | 133 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.1E-10 | 97 | 115 | No hit | No description |
PRINTS | PR00615 | 4.1E-10 | 116 | 134 | No hit | No description |
PRINTS | PR00615 | 4.1E-10 | 135 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MERGGISNIE HKYTRRAGTS GIVIREGGVP NVVATATNVV NIPDAPTNAT PEEVNQEQHQ 60 GVKREADQYM PTTNIARIMR CVLPDHVKIA DDAKEAIQVC VSEFINFITA DANNRCHRDY 120 RKTVTPEDVL AAMTSLGFGD YIDPLIVFLN KNRAQQDLER DDDNGGFVHH QQPQGAHMVR 180 SPPAPAPLVA PTMGYYVPLP PPVAGTMEKG EELGGSTRAI NAYMSCNYGR GEGSSESPEF 240 DPFQKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-36 | 64 | 153 | 7 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E01688.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012841021.1 | 1e-148 | PREDICTED: nuclear transcription factor Y subunit beta-like | ||||
TrEMBL | A0A022R339 | 1e-161 | A0A022R339_ERYGU; Uncharacterized protein | ||||
STRING | Migut.E01688.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6044 | 4 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 1e-39 | NF-YB family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.E01688.1.p |