![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.E01685.1.p | ||||||||
Common Name | MIMGU_mgv1a025838mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 190aa MW: 20891.6 Da PI: 5.2451 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 114.1 | 7.5e-36 | 1 | 86 | 8 | 93 |
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +P +n++rim+ v+P + ki++dake +q cvsefi f+tsea+++c+r+ rkt++++d+l a+++lGf dy+epl v+l+k+r Migut.E01685.1.p 1 MPTTNITRIMRCVVPDHVKIADDAKEAIQVCVSEFINFITSEANNRCHRDYRKTVTPEDVLAAITSLGFGDYIEPLIVFLNKHRAQ 86 799********************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-37 | 1 | 96 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.73E-31 | 1 | 100 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-20 | 1 | 64 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 6.5E-12 | 28 | 46 | No hit | No description |
PRINTS | PR00615 | 6.5E-12 | 47 | 65 | No hit | No description |
PRINTS | PR00615 | 6.5E-12 | 66 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 190 aa Download sequence Send to blast |
MPTTNITRIM RCVVPDHVKI ADDAKEAIQV CVSEFINFIT SEANNRCHRD YRKTVTPEDV 60 LAAITSLGFG DYIEPLIVFL NKHRAQQDLE RGSMNQLGQF VRRDDDNGGF VHQQQPQGAH 120 MVRSPPAPAP LAAPTMGYYV PLPPPVVGMV EDGEELGGST RVINAFMSCN YGRGEGSSDG 180 PEFDPFHKF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-34 | 1 | 84 | 13 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.E01685.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012852535.1 | 1e-141 | PREDICTED: nuclear transcription factor Y subunit beta-like | ||||
TrEMBL | A0A022Q9Z4 | 1e-139 | A0A022Q9Z4_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.E01685.1.p | 1e-140 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47670.2 | 5e-35 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.E01685.1.p |