PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E01548.1.p
Common NameLOC105967238, MIMGU_mgv1a008957mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 358aa    MW: 40181.1 Da    PI: 6.9277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E01548.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.3e-08125146426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       + C++f+r G+C++Gd C +aHg
  Migut.E01548.1.p 125 SACPDFRR-GECRRGDACEYAHG 146
                       67******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.6E-5121147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.394122148IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-7125146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5126147IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MMTMMKIRDH SRSNPTVGIQ PWDYHFVEDP TAEIYAPPSC ADATFDVNTM AALLRYLPSN  60
NDDGDFADDF DVPVDAFSCD NFRMFEFKVK KCALARSHDW TECPFAHPGE KARRRDPRRY  120
HYSGSACPDF RRGECRRGDA CEYAHGVFES WLHPARYRTL PCKDGTHCHR RVCFFAHTPD  180
QLRVLTHSAT SPEASPSRIG HDSLSAMPMF GSSPKSTLFS PLSPTTGSPP VSPNSVNQLA  240
ESMRYMQLNK MNMGLGLSVS PPTWGIRIGS PRSPPTTRPG FTNLPNTPIR ARVSPGFSTV  300
DAWGTSFEEE PFMERVESGR ELRERIYAKL GKENSLNRVN SDDGLCPDFD WVNELVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E01548.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847291.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotO821991e-101C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-101C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A022QS180.0A0A022QS18_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-92C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  4. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  5. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]