PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

ERF

Protein Properties

Length: 262aa MW: 27764.9 Da PI: 4.9567

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E01524.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.9	5.8e-19	72	122	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Migut.E01524.1.p 72 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 122 68***998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.6E-13	72	122	IPR001471	AP2/ERF domain
SMART	SM00380	6.1E-37	73	136	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.3E-32	73	131	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.261	73	130	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.29E-21	73	131	IPR016177	DNA-binding domain
PRINTS	PR00367	2.8E-10	74	85	IPR001471	AP2/ERF domain
CDD	cd00018	1.75E-31	74	132	No hit	No description
PRINTS	PR00367	2.8E-10	96	112	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MVAPPQTSSG DNELFSNLLS SSSLILSQTQ SLQRDDAAAK GQAAAAVAPE SGKKIKRIRE 60 STATASNSSR HPVYRGVRMR SWGKWVSEIR EPRKKSRIWL GTFPTPEMAA RAHDVAALSI 120 KGASATLNFP ELAAALPRPV SLSPRDVQAA AAKAAAMEKF DDLPSPSTTT SSSSSSLSSL 180 VSSVDLSTES EEELSEIVQL PSLGSYFDSV GLRSDFVYID NAAVEGWTLD LHPSPPWAGG 240 GGVIDDDGGI SSCFETLFWN Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-18	71	131	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E01524.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012847040.1	1e-162	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	1e-61	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A022QMV0	1e-108	A0A022QMV0_ERYGU; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	3e-51	ERF family protein

Link Out ? help Back to Top
Phytozome	Migut.E01524.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]