PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E01420.1.p | ||||||||
Common Name | LOC105967267, LOC105967268, MIMGU_mgv1a010821mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | Trihelix | ||||||||
Protein Properties | Length: 301aa MW: 33755.7 Da PI: 4.5415 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 31.6 | 4.3e-10 | 19 | 87 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 Wt +e l L++ +e++ +++ ++W+++ +++ + ++r+ +qCk kw++l +y+++k+ + Migut.E01420.1.p 19 WTAEESLILVNEIYAVESEWGATLPSFQKWQQIVENCNALEVSRNLNQCKRKWDELLIEYRRVKHDAAA 87 ****************************************************************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.3E-10 | 18 | 100 | No hit | No description |
PROSITE profile | PS50090 | 7.178 | 19 | 75 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDEPRGSRRC TRSRAAPDWT AEESLILVNE IYAVESEWGA TLPSFQKWQQ IVENCNALEV 60 SRNLNQCKRK WDELLIEYRR VKHDAAADGS LPVELFDAID MCVGARGRKY GGAEAAAVAA 120 EKAVAEEEEQ VVMATDPDSD PEAQGRATEF FLETGTKKQR PRMKRKKRRL ETLNPWGYST 180 SAKSIKQEEE EENSNINEKR GNTNNVTQST PEPEQSSVET REQIMATMLW DNAMKINAIL 240 EGNVADDTDY KLADMKNAEA VETDFTRLQG DKLIDCFGKI SETLKQLCEI VQQNATAALP 300 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 169 | KKQRPRMKRKKRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E01420.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847324.1 | 0.0 | PREDICTED: uncharacterized protein LOC105967267 | ||||
Refseq | XP_012847325.1 | 0.0 | PREDICTED: uncharacterized protein LOC105967268 | ||||
TrEMBL | A0A022QKB5 | 0.0 | A0A022QKB5_ERYGU; Uncharacterized protein | ||||
STRING | Migut.E01408.1.p | 0.0 | (Erythranthe guttata) | ||||
STRING | Migut.E01420.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8360 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 3e-32 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Migut.E01420.1.p |
Entrez Gene | 105967267 | 105967268 |