PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E01158.1.p
Common NameMIMGU_mgv1a018804mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 101aa    MW: 11527.3 Da    PI: 6.9196
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E01158.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.85.3e-31999191
            DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
                      aCaaCk++rr+C ++C la+yfpae++ +f+ v +l+G+ n lk+lk+++eeer++a++sl++eA++r++ Pv+G ++v +kl+ ++++++
  Migut.E01158.1.p  9 ACAACKHQRRRCDANCELAKYFPAEKADDFEDVYHLYGMPNTLKILKSIEEEERDKAIESLIMEAKMRLEYPVHGHFSVARKLSIEIDKAE 99
                      7**********************************************************************************99998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.240.107.4E-4723IPR001138Zn(2)-C6 fungal-type DNA-binding domain
PROSITE profilePS5089121.0728100IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-29999IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MANAVPQKAC AACKHQRRRC DANCELAKYF PAEKADDFED VYHLYGMPNT LKILKSIEEE  60
ERDKAIESLI MEAKMRLEYP VHGHFSVARK LSIEIDKAEK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-161010012102LOB family transfactor Ramosa2.1
5ly0_B4e-161010012102LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E01158.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844519.17e-65PREDICTED: LOB domain-containing protein 27-like
TrEMBLA0A022RZ441e-63A0A022RZ44_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.E01158.1.p3e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.14e-23LOB domain-containing protein 27