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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E00946.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 235aa MW: 25718.8 Da PI: 4.7377 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 121.8 | 2.9e-38 | 60 | 152 | 2 | 94 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 r+ d+++Pian++rim++vlP++a i++dake +qe vsefisfvt+ea+ +c+ + r+t++++d+l ++a+lG++dy+epl ++l+k+r + Migut.E00946.1.p 60 RDVDQYMPIANITRIMRRVLPSHAEIADDAKEAIQEYVSEFISFVTAEANWRCHCDYRRTVTPEDVLATMASLGLDDYLEPLILFLNKHRAEQ 152 788**************************************************************************************9754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.1E-36 | 55 | 156 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.27E-28 | 63 | 156 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.3E-19 | 65 | 127 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.4E-11 | 93 | 111 | No hit | No description |
PRINTS | PR00615 | 2.4E-11 | 112 | 130 | No hit | No description |
PRINTS | PR00615 | 2.4E-11 | 131 | 149 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEKGGCSNIE YKYTTRARTS GIVIREGGVA SAAASTNATN VPAAAPNTIG GQVNQQGFKR 60 DVDQYMPIAN ITRIMRRVLP SHAEIADDAK EAIQEYVSEF ISFVTAEANW RCHCDYRRTV 120 TPEDVLATMA SLGLDDYLEP LILFLNKHRA EQNSEQFVRQ GGDAGVRVGF IDNQQPPMAS 180 TVGYYVPLPP CAATMEEERD FGDLTPAIHE YILRNHGCGE GSSGGCEFDP FQKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-36 | 60 | 149 | 7 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E00946.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012839441.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit B-3-like | ||||
TrEMBL | A0A022R583 | 1e-158 | A0A022R583_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.E00946.1.p | 1e-176 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6044 | 4 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-39 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Migut.E00946.1.p |