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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Migut.E00625.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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| Family |
NAC |
| Protein Properties |
Length: 415aa MW: 46543.4 Da PI: 6.5064 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Migut.E00625.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 166.8 | 7.1e-52 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
+ppGfrFhPt+eel+++yL+kkv+++k++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk
Migut.E00625.1.p 15 VPPGFRFHPTEEELLHYYLTKKVASQKIDL-DVIRDVDLNKLEPWDIQEtcKIGSaPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDK 106
69****************************.9***************963433333556********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++s + + +g++ktLvfy+grap+g+k+dW+mheyrl
Migut.E00625.1.p 107 VIHS-NLRRIGMRKTLVFYRGRAPHGQKSDWIMHEYRL 143
**99.9999***************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009809 | Biological Process | lignin biosynthetic process |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0009901 | Biological Process | anther dehiscence |
| GO:0010047 | Biological Process | fruit dehiscence |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 415 aa
Download sequence Send
to blast |
MPEDMNLSVN GHSKVPPGFR FHPTEEELLH YYLTKKVASQ KIDLDVIRDV DLNKLEPWDI 60
QETCKIGSAP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIHS NLRRIGMRKT 120
LVFYRGRAPH GQKSDWIMHE YRLDDDSSTN NNVSSTILGD SSSLGAEEGW VVCRVFKKKN 180
YHKALESPLM MTSSLSNNNN NLPRNEGGVL DHLLMYMARS PSPSSCKQEN ESLINTAHFR 240
SPNQSSPAGN FIHHHHHLPG LMDINPTTTT ISNNNNNNNN NINQPPSSSS LASYIGEDHH 300
HMMMPIFSDR HQNSDWVSMD RLVASQLNGQ PPPPNQLFGY GEDDIINGEF SFHDDDGEPL 360
IMNHDMMHGG SDDRANDDRH DGSRTCETGL WNFAGPSSSS LSSSSSDPMC HLSV*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-48 | 15 | 180 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-48 | 15 | 180 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-48 | 15 | 180 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-48 | 15 | 180 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-48 | 15 | 180 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 1e-48 | 15 | 180 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 1e-48 | 15 | 180 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 1e-48 | 15 | 180 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 1e-48 | 15 | 180 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 1e-48 | 15 | 180 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 1e-48 | 15 | 180 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 1e-48 | 15 | 180 | 20 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 1e-48 | 15 | 180 | 17 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 1e-48 | 15 | 180 | 17 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JQ693429 | 2e-81 | JQ693429.1 Brachypodium distachyon SWN8 (SWN8) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Gondolf VM, et al.
A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
BMC Plant Biol., 2014. 14: p. 344
[PMID:25492673] - Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
GM Crops Food, 2014. 5(4): p. 302-20
[PMID:25523176] - Yuan Y,Teng Q,Zhong R,Ye ZH
TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
Plant Cell Physiol., 2016. 57(1): p. 35-45
[PMID:26556650] - Yang C, et al.
Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
Plant Physiol., 2017. 175(1): p. 333-350
[PMID:28724622] - Pascual MB, et al.
PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
[PMID:29055073] - Liu C,Yu H,Li L
SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
PLoS Genet., 2019. 15(1): p. e1007928
[PMID:30657769]
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