PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00625.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 415aa    MW: 46543.4 Da    PI: 6.5064
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00625.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.1e-52151431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPt+eel+++yL+kkv+++k++l +vi++vd++k+ePwd+++  k+ +  +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk
  Migut.E00625.1.p  15 VPPGFRFHPTEEELLHYYLTKKVASQKIDL-DVIRDVDLNKLEPWDIQEtcKIGSaPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDK 106
                       69****************************.9***************963433333556********************************** PP

               NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++s + + +g++ktLvfy+grap+g+k+dW+mheyrl
  Migut.E00625.1.p 107 VIHS-NLRRIGMRKTLVFYRGRAPHGQKSDWIMHEYRL 143
                       **99.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5711178IPR003441NAC domain
PROSITE profilePS5100555.78615178IPR003441NAC domain
PfamPF023651.9E-2716143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MPEDMNLSVN GHSKVPPGFR FHPTEEELLH YYLTKKVASQ KIDLDVIRDV DLNKLEPWDI  60
QETCKIGSAP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIHS NLRRIGMRKT  120
LVFYRGRAPH GQKSDWIMHE YRLDDDSSTN NNVSSTILGD SSSLGAEEGW VVCRVFKKKN  180
YHKALESPLM MTSSLSNNNN NLPRNEGGVL DHLLMYMARS PSPSSCKQEN ESLINTAHFR  240
SPNQSSPAGN FIHHHHHLPG LMDINPTTTT ISNNNNNNNN NINQPPSSSS LASYIGEDHH  300
HMMMPIFSDR HQNSDWVSMD RLVASQLNGQ PPPPNQLFGY GEDDIINGEF SFHDDDGEPL  360
IMNHDMMHGG SDDRANDDRH DGSRTCETGL WNFAGPSSSS LSSSSSDPMC HLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-481518017167NO APICAL MERISTEM PROTEIN
1ut4_B1e-481518017167NO APICAL MERISTEM PROTEIN
1ut7_A1e-481518017167NO APICAL MERISTEM PROTEIN
1ut7_B1e-481518017167NO APICAL MERISTEM PROTEIN
3swm_A1e-481518020170NAC domain-containing protein 19
3swm_B1e-481518020170NAC domain-containing protein 19
3swm_C1e-481518020170NAC domain-containing protein 19
3swm_D1e-481518020170NAC domain-containing protein 19
3swp_A1e-481518020170NAC domain-containing protein 19
3swp_B1e-481518020170NAC domain-containing protein 19
3swp_C1e-481518020170NAC domain-containing protein 19
3swp_D1e-481518020170NAC domain-containing protein 19
4dul_A1e-481518017167NAC domain-containing protein 19
4dul_B1e-481518017167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00321DAPTransfer from AT2G46770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E00625.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6934292e-81JQ693429.1 Brachypodium distachyon SWN8 (SWN8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829669.10.0PREDICTED: NAC domain-containing protein 43-like
SwissprotQ84WP61e-110NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A2G9GSV01e-147A0A2G9GSV0_9LAMI; Uncharacterized protein
STRINGMigut.E00625.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.14e-94NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]