PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.E00621.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YB

Protein Properties

Length: 280aa MW: 30921.1 Da PI: 8.4724

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E00621.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	116.8	1.1e-36	94	185	2	93
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 re +++P +n++rim+ vlPa+ i++dake +q cvsefi fvt+ea+++c+r+ rkt++++d+l a+++lGf dy+epl ++l+k+r Migut.E00621.1.p 94 REAVQYMPTTNITRIMRCVLPAHVNIADDAKEAIQVCVSEFINFVTAEANNRCRRDYRKTVTPEDVLAAMTSLGFGDYIEPLIIFLNKHRAQ 185 67789************************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.6E-38	88	192	IPR009072	Histone-fold
SuperFamily	SSF47113	1.27E-29	99	195	IPR009072	Histone-fold
Pfam	PF00808	5.0E-19	99	163	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	8.3E-11	127	145	No hit	No description
PRINTS	PR00615	8.3E-11	146	164	No hit	No description
PRINTS	PR00615	8.3E-11	165	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MEKKIFYSKS KKVRNQIRRR MPFSGRTQRL CSSPFSEVIR SESVKVPFTQ TCIVIREGGA 60 PTPTAATNAV DIPAAPINET LGEVNREQQQ GVKREAVQYM PTTNITRIMR CVLPAHVNIA 120 DDAKEAIQVC VSEFINFVTA EANNRCRRDY RKTVTPEDVL AAMTSLGFGD YIEPLIIFLN 180 KHRAQQDLES GSMNQLGLFV RRDDDNGGFV HHQQPQDAHM VRSPPPPAAP TMGYYVPLPP 240 PAAGTVEDGE KLGGSTTVNN AYMSCNYGCG EGSSRWTRV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	9e-36	94	183	7	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E00621.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846005.1	1e-158	PREDICTED: nuclear transcription factor Y subunit B-8-like
TrEMBL	A0A022Q9U9	1e-169	A0A022Q9U9_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.E00621.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6044	4	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	2e-37	NF-YB family protein

Link Out ? help Back to Top
Phytozome	Migut.E00621.1.p