PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

HD-ZIP

Protein Properties

Length: 221aa MW: 25010.3 Da PI: 8.0755

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E00430.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.2e-18	73	128	2	56
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++ n++++ +++e LA+kl+L+ rqV vWFqNrRa+ k Migut.E00430.1.p 73 RKKLRLTKEQSRLLEESFRQqNHTLNPKQKEILAQKLHLKARQVEVWFQNRRARSK 128 78889************98*******************************98 PP
2	HD-ZIP_I/II	107.8	7.7e-35	73	162	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLEesF++++ +L+p++K+ la++L+l++rqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n++L+ eveeLr + Migut.E00430.1.p 73 RKKLRLTKEQSRLLEESFRQQNhTLNPKQKEILAQKLHLKARQVEVWFQNRRARSKLKQTEMECEYLKRWFVSLTEQNKKLQIEVEELR-S 162 69**************99998***************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.3E-17	48	131	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.01E-16	63	131	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.876	69	130	IPR001356	Homeobox domain
SMART	SM00389	1.3E-14	71	134	IPR001356	Homeobox domain
CDD	cd00086	4.87E-14	72	131	No hit	No description
Pfam	PF00046	9.2E-16	73	128	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	105	128	IPR017970	Homeobox, conserved site
Pfam	PF02183	7.9E-9	130	164	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	7.7E-16	130	173	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MENFPNNSSS CLDLTIAMPG FSSSPSSLPS SGESGGGRMK VVDVNLVPSS EREEECMEEE 60 EEDESPNKGP APRKKLRLTK EQSRLLEESF RQQNHTLNPK QKEILAQKLH LKARQVEVWF 120 QNRRARSKLK QTEMECEYLK RWFVSLTEQN KKLQIEVEEL RSLKAGHHPD CRHLPPPPST 180 LTMCPHCQRV TTTAATNNHL DTATKMLALQ SRQPSAACFN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	130	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E00430.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846045.1	1e-162	PREDICTED: homeobox-leucine zipper protein ATHB-17
Swissprot	Q8S9N6	2e-66	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A2G9HFF8	4e-83	A0A2G9HFF8_9LAMI; Transcription factor HEX

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	5e-55	homeobox-leucine zipper protein 17

Link Out ? help Back to Top
Phytozome	Migut.E00430.1.p

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]