PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.E00356.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 261aa MW: 29912.1 Da PI: 5.0832 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+++++ +G g+W++ ar g++Rt+k+c++rw++yl Migut.E00356.1.p 31 RGPWTLEEDNLLIQYIRSHGEGSWNSSARFAGLKRTGKSCRLRWLNYL 78 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 23 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.356 | 26 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-16 | 31 | 78 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.85E-21 | 32 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-10 | 33 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-5 | 81 | 104 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MNTKGRINNP KSKKLYDELS DNKSDHEELR RGPWTLEEDN LLIQYIRSHG EGSWNSSARF 60 AGLKRTGKSC RLRWLNYLKP DIKRGNLSLQ EQLLILELHS KWGNSKKFLE AIRMFWMPRL 120 LEKMQQDTSS SSSSIETQKH AAKSEAKAEA EAEAPPFSPV SKQPTTTNNN NIININNNNN 180 IIINSEDDSN SLFEDNNYYV GFPNYETMME ELELEEAAQG NSLLCGRHVL QNDWFGDEDL 240 GSSTTSFWNT DELWQNSKGW * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-12 | 28 | 104 | 24 | 99 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.E00356.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012845948.1 | 1e-139 | PREDICTED: LOW QUALITY PROTEIN: myb-related protein 305 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68320.1 | 2e-37 | myb domain protein 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.E00356.1.p |