PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00055.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 496aa    MW: 55740.1 Da    PI: 7.2348
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024416438123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C+++F++   L  H r+H
  Migut.E00055.1.p 416 HVCPFCDRVFKNGQALGGHKRSH 438
                       79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.23931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12936IPR007087Zinc finger, C2H2
SuperFamilySSF576674.57E-5931No hitNo description
PfamPF139122.4E-6931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576674.57E-5104131No hitNo description
SMARTSM003550.25109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577109136IPR007087Zinc finger, C2H2
PfamPF139122.9E-7110133IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SMARTSM003556.3345367IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307345372IPR007087Zinc finger, C2H2
SuperFamilySSF576675.84E-8345367No hitNo description
PfamPF139121.6E-7345369IPR007087Zinc finger, C2H2
PROSITE patternPS000280347367IPR007087Zinc finger, C2H2
SuperFamilySSF576675.84E-8411438No hitNo description
Gene3DG3DSA:3.30.160.606.2E-4414438IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.015416438IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141416438IPR007087Zinc finger, C2H2
PfamPF139122.1E-8416438IPR007087Zinc finger, C2H2
PROSITE patternPS000280418438IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEEDHEFRFV CKLCNKKYPC GKSLGGHMRS HVVSSSAEIS SLEKVDSAMK RISPITDFVG  60
GHHPHPHSTT INDSRTGEFG NGQTSYGLRE NPRKSWRAVG SNFPSPQERI CKQCGKGFQS  120
LKALCGHMAC HSDRDKVLKD DQYSWTSENN QKLVIDSHSD TDEAEAEAEA EAEDRILRSS  180
SKNKRCKKIV NNNNGSSSVS EIDGEENEEV AMCLMMLSRD SGNNNKGGVN SVVESSDNNS  240
VILETKSSSI DIKKIHNNNN NSNQENKTKK IDEVHNDSDS GYFLDECSKY ESDASVDGFR  300
RNIPSYFEYD NKPSMKTRGG DESSRKRRYI PENIPEEYTE KRSKYECFNC KKTFKSYQAL  360
GGHRPCHKRS TAFYETRYES GENSLEGSTE FVANNNSLSN RKSIEKKMKG KKNKPHVCPF  420
CDRVFKNGQA LGGHKRSHFI GGHVENNNNN NNNNNNNNNN NNNRSTVVKA DMLDLNLPAP  480
VDDEDDVPDE YPPPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E00055.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855455.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A022Q5920.0A0A022Q592_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-46C2H2-like zinc finger protein