PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00014.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 471aa    MW: 50854.7 Da    PI: 8.6533
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.32.6e-39181258178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cqv+gC +dls akeyhr+h+vC+ hsk+p+v+v gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  Migut.E00014.1.p 181 CCQVQGCITDLSLAKEYHRKHRVCDNHSKCPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQQ 258
                       6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-30175243IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.53179256IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.06E-36180261IPR004333Transcription factor, SBP-box
PfamPF031108.4E-30182255IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MECNAKWDWE SFVAFGPKAI ESPKKLQLAD WMIVDDADNN AGSFNLSAFD GNSVTSVSDG  60
GHGSSVKSSI SASTDSTTKD GMQTHNFRFG KFEGSSGNFS KKMEMNGTKF LETSPKPEAS  120
VGSGEPLIGL KLGKRTYFEN SGGGGAGAGG TVKSAASFPM MHTPTPSSTT LKKTKQNARI  180
CCQVQGCITD LSLAKEYHRK HRVCDNHSKC PKVIVGGLER RFCQQCSRFH GLSEFDEKKR  240
SCRRRLSDHN ARRRKPQQET IQFNPTRLSS PFYGGSKQMS FVLNSSPLKT PESCAWDSGY  300
NSKFTLTKGC PSKSYGDGVT DEQLHTPGTK LRNAIYMPNA DNALLFATKN ATSEVFNPGG  360
GSKGSMMSSC VDAAAAAPEY DRALSLLSSN SSWDSSSQQE SVPVPAFHSI PEAVPLSSSE  420
FWLTGQHFTH SNFQSFPANT NFQDIHLSKP PPPPPYGGGA SADFFSNILN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-281822551184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237254KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E00014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831656.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_012831657.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_012831658.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_012831659.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_012831660.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_012831662.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_012831663.10.0PREDICTED: squamosa promoter-binding-like protein 12
TrEMBLA0A022RQP70.0A0A022RQP7_ERYGU; Uncharacterized protein
STRINGMigut.E00014.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-61squamosa promoter binding protein-like 2