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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D02442.1.p | ||||||||
Common Name | LOC105969951, MIMGU_mgv1a015392mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 160aa MW: 17834.9 Da PI: 5.4819 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 41.8 | 2.6e-13 | 20 | 116 | 6 | 97 |
NF-YB 6 rflPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 ++lP + v r++k+ l ++ is +d+ + e + fi ++++ a+d c++ +r+ in++d++ al ++ f +++ pl++ l+++r+ Migut.D02442.1.p 20 EELPKTIVRRVVKEKLSqlsSDYEISllRDSLQAFCESARIFIHYLSATANDTCKEANRQIINAEDVFKALEEIDFSEFIGPLRASLEEFRQK 112 6789999999999876511145566644799999999999***************************************************99 PP NF-YB 94 egek 97 +++k Migut.D02442.1.p 113 NADK 116 9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-28 | 13 | 156 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.2E-7 | 21 | 90 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.24E-22 | 22 | 143 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MAENGGKEKE LTEKVVSEAE ELPKTIVRRV VKEKLSQLSS DYEISLLRDS LQAFCESARI 60 FIHYLSATAN DTCKEANRQI INAEDVFKAL EEIDFSEFIG PLRASLEEFR QKNADKKSAS 120 SKGKDTSKKA KRKEPPPAQS PGKNKRREVE SDGNDDNAD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D02442.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012850173.1 | 1e-112 | PREDICTED: DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A022QFH7 | 1e-110 | A0A022QFH7_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D02442.1.p | 1e-111 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-40 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D02442.1.p |
Entrez Gene | 105969951 |