PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02202.1.p
Common NameLOC105949060, MIMGU_mgv1a008806mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 362aa    MW: 41103.8 Da    PI: 9.6685
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02202.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-056082123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k F r  nL+ H r H
  Migut.D02202.1.p 60 FVCEVCNKGFQRDQNLQLHRRGH 82
                      89*******************88 PP
2zf-C2H213.80.00018137159123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ykC +C+k +  +s+ k H + +
  Migut.D02202.1.p 137 YKCDKCSKKYAVQSDWKAHSKIC 159
                       9******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.24E-75982No hitNo description
Gene3DG3DSA:3.30.160.607.1E-65982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976082IPR007087Zinc finger, C2H2
PfamPF121716.4E-56082IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0216082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355120102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-7132157No hitNo description
SMARTSM0035580137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMSDDGQQLA SIRSFIQDPN PNPNPIIHPS KRKRNLPGTP DPDAEVMALS PKSLMATNRF  60
VCEVCNKGFQ RDQNLQLHRR GHNLPWKLKQ RSNKEFIRKK VYICPEKTCV HHHPARALGD  120
LTGIKKHYSR KHGEKKYKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRKDSFIT  180
HRAFCDALVE ESTRFNNNNS PPPVSSSAGN SLKFSGGMFV GSSSQNHHHM INLDLLQKTP  240
PPLRNIPVWL DSIANPGLPE FEQMAAEAQN EWFGRGQETM FGGENNICNI NNGSMEEGNK  300
LGNMSEAISS SIYYSSKERN HHHHHLHQLR CLQLHCFRKQ LKWGRQETPP FWVALAPVLL  360
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34133199372Zinc finger protein JACKDAW
5b3h_F2e-34133199372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18699KLKQRSNKEFIRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D02202.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827781.10.0PREDICTED: protein indeterminate-domain 9-like
SwissprotQ944L31e-109IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBLA0A022PTJ70.0A0A022PTJ7_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.14e-99C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]