PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D02129.2.p | ||||||||
Common Name | LOC105949069, MIMGU_mgv1a014387mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 160aa MW: 18344.4 Da PI: 8.4863 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Tt E++l +++++++G++ W++Iar+++ gRt++++k++w++++ Migut.D02129.2.p 2 TTHEEKLVLELHNKWGNR-WSRIARKIP-GRTDNEIKNYWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.9E-10 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.262 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 1.47E-10 | 1 | 43 | No hit | No description |
Pfam | PF00249 | 5.0E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-18 | 2 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.35E-12 | 2 | 51 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MTTHEEKLVL ELHNKWGNRW SRIARKIPGR TDNEIKNYWR THMRKKAQDQ KKTKRMISPS 60 LSSSSSSSFS NSSTSSISNN SRPNAGPTVD SSSRANTAGE KEEEISTKVY SMDEIWKDIE 120 LSEESSNFKC QEMISHTWDM LMQPIGDDNF HSLPFYNHI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D02129.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059395 | 5e-40 | KF059395.1 Salvia miltiorrhiza MYB-related transcription factor (MYB41) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827789.1 | 1e-114 | PREDICTED: transcription factor MYB48 | ||||
Swissprot | Q9LX82 | 6e-28 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A022PVX0 | 1e-113 | A0A022PVX0_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 2e-28 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D02129.2.p |
Entrez Gene | 105949069 |
Publications ? help Back to Top | |||
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