PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D02080.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 675aa MW: 74774.3 Da PI: 9.7787 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 5.7e-08 | 575 | 624 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r ++T E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Migut.D02080.4.p 575 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 624 679***********************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.34E-6 | 376 | 449 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 8.916 | 381 | 449 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 15.175 | 570 | 629 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-8 | 574 | 627 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 575 | 625 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.06E-17 | 576 | 626 | No hit | No description |
SuperFamily | SSF46689 | 6.55E-16 | 576 | 657 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MVLQKRLDYG FNGYQVPPIP RAARSARRRC MFKKKADDNQ QMCAFDLLAT VAGKLLSDGE 60 NNNTSSRKDI PARVEDPVCK VEEDIKPPLD EKSSSGAHNY YERNFLFTEL VSEQNDAISR 120 PASGITTSDC SEKVNSAEQL VNDDCKLRLG IFTPSVDFYG SENESRKETK KIDIANNNNN 180 NNNNNNNNNN SNNNNNSNNN NNTKTMSIRN ASEGFDRKPS GLVCSVDNSV KFPFCKNPVN 240 NINNNGESVN LVNRDDDDNF SERARNKAAA LKSPPRVGDR RFRKLQHCAE RSNYVNRKNN 300 SKRQRSLRDY PFKKRKLYEC SGSVSNSDEG NSSGGIHRQN ENGTNPDGIG SGPTLPEVAA 360 PPTPTSVAGG YVSFRSRNSQ VKLKIKSFRV PELFIEIPET ATVGSLKRTV MEAVNAVLGG 420 GLRVGVVVQG KKIRDDNKTL LQTGISHDSN NSDNTLGFTL EPSPAPPPLL QSSYPESKPL 480 PRYLAAVNNQ QGNNNNNNVA LDTDTVSTPS PAADVPGSSF SNFMESDYDS APSHSRMSLS 540 ESKALVPLCS TKQDALAVVP FRKSKRSESV QRRIRRPFTV AEVEALVQAV EKLGTGRWRD 600 VKLRAFDSAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQELLDRVLT AHAYWSQQQA 660 KQQLKSHPDT CLLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 1e-53 | 562 | 665 | 4 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 278 | 284 | DRRFRKL |
2 | 301 | 316 | KRQRSLRDYPFKKRKL |
3 | 306 | 315 | LRDYPFKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D02080.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827894.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5 isoform X1 | ||||
Refseq | XP_012827895.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5 isoform X1 | ||||
Refseq | XP_012827896.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5 isoform X1 | ||||
Refseq | XP_012827897.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5 isoform X1 | ||||
Refseq | XP_012827898.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5 isoform X1 | ||||
TrEMBL | A0A022PW09 | 0.0 | A0A022PW09_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 3e-93 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D02080.4.p |